ggKbase home page

scnpilot_p_inoc_scaffold_2184

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2184_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..156
DNA (156bp) protein (52aa)
parB partition protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E0639
hypothetical protein Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
parB partition protein
scnpilot_p_inoc_scaffold_2184_2
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153..686
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C0AB2
transposase
Transposase {ECO:0000313|EMBL:AJP47690.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
scnpilot_p_inoc_scaffold_2184_3
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

683..1207
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003743BE1
peptidase
Peptidase {ECO:0000313|EMBL:AJP47689.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
scnpilot_p_inoc_scaffold_2184_4
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1527..3476
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUX8_POLNA
Type VI secretion protein {ECO:0000313|EMBL:AJP47688.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.
type VI secretion protein
scnpilot_p_inoc_scaffold_2184_5
unknown

Not on your lists

3513..3767
DNA (255bp) protein (85aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2184_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3764..4297
DNA (534bp) protein (178aa)
sigma-70 family RNA polymerase sigma factor Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
sigma-70 family RNA polymerase sigma factor id=12498535 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sigma-70 family RNA polymerase sigma factor
scnpilot_p_inoc_scaffold_2184_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4389..5444
DNA (1056bp) protein (352aa)
permease Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
permease; K07089 id=12498536 bin=THIO_MID species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
permease
scnpilot_p_inoc_scaffold_2184_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5456..5752
DNA (297bp) protein (99aa)
thiol-disulfide isomerase id=12498539 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
thiol-disulfide isomerase Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
thiol-disulfide isomerase and thioredoxins family protein
scnpilot_p_inoc_scaffold_2184_9
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

6172..6933
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UV18_ROSS1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ90471.1}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" sour
scnpilot_p_inoc_scaffold_2184_10
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7208..8197)
DNA (990bp) protein (330aa)
Alpha/beta hydrolase {ECO:0000313|EMBL:KGD66551.1}; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp. 19
scnpilot_p_inoc_scaffold_2184_11
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8366..8839
DNA (474bp) protein (158aa)
Arsenite oxidase small subunit precursor (EC:1.20.9.1)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23383.1}; EC=1.20.9.1 {ECO:0000313|EMBL:AJG23383.1};; TaxID=68895 species="Bacteria; Proteobacteria; Bet
Arsenite oxidase Rieske subunit n=1 Tax=Pseudomonas stutzeri TS44 RepID=B7SKG1_PSEST
scnpilot_p_inoc_scaffold_2184_12
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8856..11153
DNA (2298bp) protein (766aa)
Arsenite oxidase large subunit {ECO:0000313|EMBL:CCV04584.1}; EC=1.20.9.1 {ECO:0000313|EMBL:CCV04584.1};; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacte
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI0002F7FEC4
arsenite oxidase large subunit
scnpilot_p_inoc_scaffold_2184_13

Not on your lists

11250..12347
DNA (1098bp) protein (366aa)
Porin, Gram-negative type n=1 Tax=mine drainage metagenome RepID=E6QQ82_9ZZZZ rbh
Porin, Gram-negative type {ECO:0000313|EMBL:CBI09403.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
porin
scnpilot_p_inoc_scaffold_2184_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12808..13563
DNA (756bp) protein (252aa)
Transposase, TnpA family n=1 Tax=Rhodanobacter denitrificans RepID=M4NGM8_9GAMM
transposase, TnpA family
Transposase, TnpA family {ECO:0000313|EMBL:AGG88813.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter d
scnpilot_p_inoc_scaffold_2184_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13563..13919
DNA (357bp) protein (119aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VUZ6_POLNA
LysR family transcriptional regulator Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
LysR family transcriptional regulator
Displaying 15 items

View Taxonomy