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scnpilot_p_inoc_scaffold_95

Search features with annotation key words

Displaying items 31-60 of 318 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_95_31
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32892..33743)
DNA (852bp) protein (284aa)
hypothetical protein id=12497389 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein
scnpilot_p_inoc_scaffold_95_32
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33840..35801
DNA (1962bp) protein (654aa)
helicase C2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] id=12497388 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Helicase c2 {ECO:0000313|EMBL:AAZ96950.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans
helicase c2
scnpilot_p_inoc_scaffold_95_33
unknown

Not on your lists

36256..36525
DNA (270bp) protein (90aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_95_34
Thiobacillus sp. SCN2, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36594..36968)
DNA (375bp) protein (125aa)
id=12497387 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
id=12497387 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
scnpilot_p_inoc_scaffold_95_35
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37143..37601)
DNA (459bp) protein (153aa)
bacterioferritin comigratory protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] id=12497386 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
bacterioferritin comigratory protein
Bacterioferritin comigratory protein {ECO:0000313|EMBL:AAZ96952.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="T
scnpilot_p_inoc_scaffold_95_36
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37611..38270)
DNA (660bp) protein (220aa)
hypothetical protein id=12497385 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein Tax=GWE1_Thiobacillus_62_9_curated
hypothetical protein rbh
scnpilot_p_inoc_scaffold_95_37
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38289..39245)
DNA (957bp) protein (319aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] id=12497384 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophil
scnpilot_p_inoc_scaffold_95_38
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39420..41660
DNA (2241bp) protein (747aa)
cell division protein FtsK n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A5D2 rbh
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
DNA translocase FtsK
scnpilot_p_inoc_scaffold_95_39
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41657..42358
DNA (702bp) protein (234aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] id=12497382 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
4-diphosphocytidyl-2C-methyl-D-erythritol synthase
scnpilot_p_inoc_scaffold_95_40
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42351..42833
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] id=12497381 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00107}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_00107}
scnpilot_p_inoc_scaffold_95_41
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42826..43368
DNA (543bp) protein (181aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=12497380 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
2'-5' RNA ligase
scnpilot_p_inoc_scaffold_95_42
Neisseria cinerea, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43400..43849)
DNA (450bp) protein (150aa)
hypothetical protein id=12497379 bin=THIO_MID species=unknown genus=Neisseria taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEZ71453.1}; TaxID=546262 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseri
hypothetical protein
scnpilot_p_inoc_scaffold_95_43
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44035..44583)
DNA (549bp) protein (183aa)
hypothetical protein id=12497378 bin=THIO_MID species=Pseudomonas putida genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN55526.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putid
scnpilot_p_inoc_scaffold_95_44
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44689..45372)
DNA (684bp) protein (228aa)
hypothetical protein id=12497377 bin=THIO_MID species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM93124.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM
scnpilot_p_inoc_scaffold_95_45
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45369..45992)
DNA (624bp) protein (208aa)
sigma-70 region 2; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12497376 bin=THIO_MID species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
sigma-70 region 2
Sigma-K factor {ECO:0000313|EMBL:EWS58776.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
scnpilot_p_inoc_scaffold_95_46
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46376..48289
DNA (1914bp) protein (638aa)
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=12497375 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule
scnpilot_p_inoc_scaffold_95_47
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48451..48927
DNA (477bp) protein (159aa)
translation initiation factor 3; K02520 translation initiation factor IF-3 id=12497374 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
translation initiation factor 3; K02520 translation initiation factor IF-3 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
translation initiation factor 3
scnpilot_p_inoc_scaffold_95_48
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


49052..49249
DNA (198bp) protein (66aa)
50S ribosomal protein L35P; K02916 large subunit ribosomal protein L35 id=12497373 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
scnpilot_p_inoc_scaffold_95_49
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


49262..49621
DNA (360bp) protein (120aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 id=12497372 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
scnpilot_p_inoc_scaffold_95_50
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


49692..50711
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=12497371 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
scnpilot_p_inoc_scaffold_95_51
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


50728..53073
DNA (2346bp) protein (782aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=12497370 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00283};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000255|HAMAP-Rule:MF_00283};
scnpilot_p_inoc_scaffold_95_52
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53070..53444
DNA (375bp) protein (125aa)
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha id=12497369 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
ihfA; integration host factor subunit alpha
scnpilot_p_inoc_scaffold_95_53
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53422..53799
DNA (378bp) protein (126aa)
MerR family transcriptional regulator id=12497368 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
MerR family transcriptional regulator Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
MerR family transcriptional regulator
scnpilot_p_inoc_scaffold_95_54
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54074..54658
DNA (585bp) protein (195aa)
superoxide dismutase, Fe (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=12497367 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
superoxide dismutase, Fe (EC:1.15.1.1)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophil
scnpilot_p_inoc_scaffold_95_55
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54791..55030
DNA (240bp) protein (80aa)
hypothetical protein id=12497366 bin=THIO_MID species=Candidatus Glomeribacter gigasporarum genus=Candidatus Glomeribacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=RBG_16_Betaproteobacteria_58_11_curated
AbrB family transcriptional regulator
scnpilot_p_inoc_scaffold_95_56
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55027..55452
DNA (426bp) protein (142aa)
hypothetical protein id=12497365 bin=THIO_MID species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein Tax=RBG_16_Betaproteobacteria_58_11_curated
twitching motility protein PilT
scnpilot_p_inoc_scaffold_95_57
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55588..56589
DNA (1002bp) protein (334aa)
putative periplasmic protease; K04774 serine protease SohB [EC:3.4.21.-] id=12497364 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
periplasmic protease
Serine protease SohB {ECO:0000313|EMBL:AAZ98582.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus deni
scnpilot_p_inoc_scaffold_95_58
Francisella philomiragia, Francisella, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56688..57515)
DNA (828bp) protein (276aa)
adenine-specific DNA methyltransferase; K06223 DNA adenine methylase [EC:2.1.1.72] id=12497363 bin=THIO_MID species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=THIO_MID organism_group=Betaproteobacteria rbh
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=28110 species="Bacteria; Proteobacteria; Gammaproteobacteria
adenine-specific DNA methyltransferase
scnpilot_p_inoc_scaffold_95_59

Not on your lists

comp(57512..59932)
DNA (2421bp) protein (807aa)
hypothetical protein id=12497362 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD44213.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
scnpilot_p_inoc_scaffold_95_60
Geminocystis sp. NIES-3708, Geminocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(60294..60698)
DNA (405bp) protein (135aa)
hypothetical protein id=12497360 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=THIO_MID organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:BAQ63217.1}; TaxID=1615909 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Geminocystis.;" source="Geminocystis sp. NIES-3708.;"
hypothetical protein
Displaying items 31-60 of 318 in total

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