ggKbase home page

scnpilot_p_inoc_scaffold_706

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_706_1
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..90
DNA (90bp) protein (30aa)
Integrase {ECO:0000313|EMBL:KJS39429.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
scnpilot_p_inoc_scaffold_706_2
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

146..820
DNA (675bp) protein (225aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. S9 RepID=UPI00025575B0
LysR family transcriptional regulator {ECO:0000313|EMBL:KFE48182.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudom
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_706_3
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1449..2708)
DNA (1260bp) protein (420aa)
Putative glycerate kinase {ECO:0000313|EMBL:KGM89229.1}; EC=1.1.1.81 {ECO:0000313|EMBL:KGM89229.1};; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobactera
hydroxypyruvate reductase (EC:1.1.1.81)
Probable hydroxypyruvate reductase oxidoreductase protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5P7_9RHOB rbh
scnpilot_p_inoc_scaffold_706_4
unknown

Not on your lists

2861..3163
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_706_5
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3151..4464)
DNA (1314bp) protein (438aa)
UPI0003D1A9AB related cluster n=1 Tax=unknown RepID=UPI0003D1A9AB rbh
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49650.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterace
TRAP dicarboxylate transporter subunit DctM
scnpilot_p_inoc_scaffold_706_6
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4486..5061)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FPK1_PELBH rbh
Uncharacterized protein {ECO:0000313|EMBL:EAU46212.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermuden
TRAP transport system, small permease
scnpilot_p_inoc_scaffold_706_7
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5058..6050)
DNA (993bp) protein (331aa)
UPI0003D1ADEA related cluster n=1 Tax=unknown RepID=UPI0003D1ADEA rbh
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49652.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterace
TRAP transport system substrate-binding protein rbh
scnpilot_p_inoc_scaffold_706_8
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6121..7842)
DNA (1722bp) protein (574aa)
UPI0003D1A3BC related cluster n=1 Tax=unknown RepID=UPI0003D1A3BC rbh
N-methylhydantoinase B {ECO:0000313|EMBL:EAU48290.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermudens
hyuB; hydantoin utilization protein
scnpilot_p_inoc_scaffold_706_9
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7839..9893)
DNA (2055bp) protein (685aa)
UPI0003D1A8D4 related cluster n=1 Tax=unknown RepID=UPI0003D1A8D4 rbh
Contig26, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49654.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterace
hyuA; hydantoin utilization protein
scnpilot_p_inoc_scaffold_706_10
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10040..10765
DNA (726bp) protein (242aa)
Putative transcriptional regulator protein, AsnC/GntR family n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FXB0_PELBH rbh
Putative transcriptional regulator protein, AsnC/GntR family {ECO:0000313|EMBL:EAU48292.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pela
transcription regulator family protein
scnpilot_p_inoc_scaffold_706_11
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11108..11425)
DNA (318bp) protein (106aa)
Histone family protein nucleoid-structuring protein H-NS n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y7Y4_PARAH
Trans-acting regulatory protein hvrA {ECO:0000313|EMBL:KFI24541.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Hae
histone family protein nucleoid-structuring protein H-NS
scnpilot_p_inoc_scaffold_706_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11734..12843)
DNA (1110bp) protein (370aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] Tax=GWF1_Rhodobacteraceae_65_7_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9)
histidinol-phosphate aminotransferase id=2813727 bin=GWF1_Rhodobacteraceae_65_7 species=Pseudomonas sp. genus=unknown taxon_order=unknown taxon_class=unknown phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_706_13
Paracoccus yeei, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12857..14248)
DNA (1392bp) protein (464aa)
FAD linked oxidase-like protein id=2813723 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodospirillum rubrum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
D-lactate dehydrogenase {ECO:0000313|EMBL:AJW30101.1}; TaxID=147645 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus yeei.;"
FAD linked oxidase-like protein
scnpilot_p_inoc_scaffold_706_14
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14348..15904)
DNA (1557bp) protein (519aa)
Peptide ABC transporter, periplasmic peptide-binding protein id=2813719 bin=GWF1_Rhodobacteraceae_65_7 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
peptide ABC transporter substrate-binding protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC-type dipeptide transport system, periplasmic component
scnpilot_p_inoc_scaffold_706_15
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16096..17028
DNA (933bp) protein (311aa)
LysR substrate-binding protein id=2813715 bin=GWF1_Rhodobacteraceae_65_7 species=Mesorhizobium ciceri genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
LysR family transcriptional regulator Tax=GWF1_Rhodobacteraceae_65_7_curated
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_706_16
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17113..18153
DNA (1041bp) protein (347aa)
van; vanillate O-demethylase oxygenase; K03862 vanillate monooxygenase [EC:1.14.13.82] Tax=GWF1_Rhodobacteraceae_65_7_curated
van; vanillate O-demethylase oxygenase (EC:1.14.13.82)
Vanillate O-demethylase oxygenase-like protein id=2813712 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_706_17
Paracoccus yeei, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18157..19338
DNA (1182bp) protein (394aa)
phthalate 4,5-dioxygenase (EC:1.14.12.7)
Flavohemoprotein-like protein, oxidoreductase {ECO:0000313|EMBL:AJW30105.1}; TaxID=147645 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" sourc
Oxidoreductase FAD/NAD(P)-binding domain-containing protein id=2514706 bin=GWF1_Rhodobacteraceae_65_7 species=Alcaligenes sp. HPC1271 genus=Alcaligenes taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_706_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19411..21027)
DNA (1617bp) protein (539aa)
ABC transporter-like protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter related protein id=2514699 bin=GWF1_Rhodobacteraceae_65_7 species=Sagittula stellata genus=Sagittula taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
ABC transporter-like protein
scnpilot_p_inoc_scaffold_706_19
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21031..21888)
DNA (858bp) protein (286aa)
Peptide ABC transporter, permease protein id=2514694 bin=GWF1_Rhodobacteraceae_65_7 species=Marinomonas sp. MED121 genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
prbC; proline betaine ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=GWF1_Rhodobacteraceae_65_7_curated
prbC; proline betaine ABC transporter permease
scnpilot_p_inoc_scaffold_706_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21893..22861)
DNA (969bp) protein (323aa)
Uncharacterized protein id=2514691 bin=GWF1_Rhodobacteraceae_65_7 species=Amphimedon queenslandica genus=Amphimedon taxon_order=Haplosclerida taxon_class=Demospongiae phylum=Porifera tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein Tax=GWF1_Rhodobacteraceae_65_7_curated
ABC transporter permease
scnpilot_p_inoc_scaffold_706_21
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23021..23704
DNA (684bp) protein (228aa)
Histidine utilization repressor id=2514685 bin=GWF1_Rhodobacteraceae_65_7 species=Roseovarius nubinhibens genus=Roseovarius taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hutC; histidine utilization repressor; K05836 GntR family transcriptional regulator, histidine utilization repressor Tax=GWF1_Rhodobacteraceae_65_7_curated
hutC; histidine utilization repressor
scnpilot_p_inoc_scaffold_706_22
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23893..24387)
DNA (495bp) protein (165aa)
AsnC family transcriptional regulator n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AIT2_BURGB
AsnC family transcriptional regulator
AsnC family transcriptional regulator {ECO:0000313|EMBL:ACR31812.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burk
scnpilot_p_inoc_scaffold_706_23
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24537..25577
DNA (1041bp) protein (347aa)
Alcohol dehydrogenase n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AIT1_BURGB rbh
alcohol dehydrogenase rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:ACR31811.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae
scnpilot_p_inoc_scaffold_706_24
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25735..26319
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LVM8_RUEPO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV93980.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (st
scnpilot_p_inoc_scaffold_706_25
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26261..27715
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SRD9_9RHOB rbh
Nucleotidyltransferase {ECO:0000313|EMBL:KGJ04258.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilu
Nucleotidyltransferase/DNA polymerase involved in DNA repair
scnpilot_p_inoc_scaffold_706_26
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27712..31017
DNA (3306bp) protein (1102aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodo
Error-prone DNA polymerase n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=DNAE2_RUEPO rbh
DNA polymerase III, alpha subunit, putative rbh
scnpilot_p_inoc_scaffold_706_27
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31361..31858
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00031D0419
Spore coat protein U {ECO:0000313|EMBL:KIX17588.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361.;"
spore coat protein U
scnpilot_p_inoc_scaffold_706_28
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31873..32586
DNA (714bp) protein (238aa)
P pilus assembly protein, chaperone PapD n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IPI2_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KIX17587.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
P pilus assembly protein, chaperone PapD
scnpilot_p_inoc_scaffold_706_29
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32564..34954
DNA (2391bp) protein (797aa)
Fimbrial biogenesis outer membrane usher protein n=1 Tax=Sinorhizobium meliloti (strain AK83) RepID=F6EE69_SINMK
Uncharacterized protein {ECO:0000313|EMBL:KIX17586.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
fimbrial biogenesis outer membrane usher protein
scnpilot_p_inoc_scaffold_706_30
Paracoccus sp. 361, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34951..35922
DNA (972bp) protein (324aa)
Spore coat protein U n=1 Tax=Nitratireductor indicus C115 RepID=K2NP20_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIX17585.1}; TaxID=1603292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 361
spore coat protein u
Displaying items 1-30 of 41 in total

View Taxonomy