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scnpilot_p_inoc_scaffold_258_31

Organism: SCNpilot_P_inoc_Xanthomonadales_65_40

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 29538..29819

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW35_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 85.4
  • Coverage: 89.0
  • Bit_score: 153
  • Evalue 1.40e-34
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhoda similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 89.0
  • Bit_score: 153
  • Evalue 2.00e-34
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 85.9
  • Coverage: 85.0
  • Bit_score: 149
  • Evalue 3.40e-34

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 282
ATGTCAAAAGGGCAGTCGCTGCAGGATCCGTTTCTGAACGCCTTGCGCCGCGAGCGCGTGCCGGTGTCCATCTACCTCGTCAACGGCATCAAGCTGCAAGGCACCATCGAGTCCTTCGACCAGTTCGTCGTGCTGCTGCGCAATACGGTCAGCCAGATGGTCTACAAGCACGCGATCTCCACGGTCGTGCCCAGCCGCAACGTGCGCCTCGGCGACGGCCACCACGGTCACGGCAACGACCACGCCGCCGAGGACGGGCACGGCGACCCGAACGAAGGCTGA
PROTEIN sequence
Length: 94
MSKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGTIESFDQFVVLLRNTVSQMVYKHAISTVVPSRNVRLGDGHHGHGNDHAAEDGHGDPNEG*