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scnpilot_p_inoc_scaffold_2736_10

Organism: SCNpilot_P_inoc_Hydrogenophaga_70_12

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 12 / 38 MC: 1
Location: comp(5342..5524)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 60.0
  • Bit_score: 111
  • Evalue 5.60e-22
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 id=5080769 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD similarity UNIREF
DB: UNIREF100
  • Identity: 91.8
  • Coverage: 61.0
  • Bit_score: 109
  • Evalue 1.50e-21
rpmD; 50S ribosomal protein L30 similarity KEGG
DB: KEGG
  • Identity: 86.7
  • Coverage: 60.0
  • Bit_score: 106
  • Evalue 2.10e-21

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Taxonomy

R_Burkholderiales_67_14 → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 183
ATGAGCACTCCCAACACCCTGAAGGTCCAGCTCGTGCGCAGCCCCATCGGCTGCAAGCAGAGCCACCGCGACACCGTGCGCGGCCTGGGCCTGCGCAAGCTCAACAGCATCAGCGAACTGCAGGACACCCCGGCCGTGCGCGGCATGATCAACAAGATCAGCTACCTGGTCAAAGTCCTCTGA
PROTEIN sequence
Length: 61
MSTPNTLKVQLVRSPIGCKQSHRDTVRGLGLRKLNSISELQDTPAVRGMINKISYLVKVL*