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scnpilot_p_inoc_scaffold_2027

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2027_1
unknown

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1..78
DNA (78bp) protein (26aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2027_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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284..496
DNA (213bp) protein (71aa)
TRAP-type transport system n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MSH4_9BURK
TRAP-type transport system {ECO:0000313|EMBL:EIK92164.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga
TRAP transporter, 4TM/12TM fusion protein
scnpilot_p_inoc_scaffold_2027_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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493..1140
DNA (648bp) protein (216aa)
Asp/Glu/Hydantoin racemase n=1 Tax=Acidovorax sp. CF316 RepID=J0KSA7_9BURK rbh
Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:EJE54013.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source=
Asp/Glu/hydantoin racemase
scnpilot_p_inoc_scaffold_2027_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1204..2316)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9J5_ACIDE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_p_inoc_scaffold_2027_5
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2335..3141
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002F18403
short-chain dehydrogenase/reductase sdr Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_2027_6
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3138..3542
DNA (405bp) protein (135aa)
folB; dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase protein {ECO:0000313|EMBL:ADJ65867.1}; EC=4.1.2.25 {ECO:0000313|EMBL:ADJ65867.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalob
Dihydroneopterin aldolase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IVQ9_HERSS
scnpilot_p_inoc_scaffold_2027_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3560..3934
DNA (375bp) protein (125aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25] id=12551744 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
dihydroneopterin aldolase
scnpilot_p_inoc_scaffold_2027_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4080..4991
DNA (912bp) protein (304aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9J2_ACIDE
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" sour
PP-loop domain-containing protein
scnpilot_p_inoc_scaffold_2027_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5018..5617
DNA (600bp) protein (200aa)
hypothetical protein id=12552593 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
scnpilot_p_inoc_scaffold_2027_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5620..6258
DNA (639bp) protein (213aa)
phosphoglycerate mutase (EC:5.4.2.1); K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Phosphoglycerate mutase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9J0_ACIDE
phosphoglycerate mutase
scnpilot_p_inoc_scaffold_2027_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6260..7129
DNA (870bp) protein (290aa)
yhhn family protein
yhhn family protein id=12552590 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
YhhN family protein {ECO:0000313|EMBL:ACM31981.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain
scnpilot_p_inoc_scaffold_2027_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7219..8235)
DNA (1017bp) protein (339aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI000237515F
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJA09416.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acido
TRAP dicarboxylate transporter subunit DctP
scnpilot_p_inoc_scaffold_2027_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8277..9581)
DNA (1305bp) protein (435aa)
dehydroascorbate transporter n=1 Tax=Acidovorax radicis RepID=UPI000237515E rbh
TRAP dicarboxylate transporter subunit DctM Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
TRAP dicarboxylate transporter subunit DctM
scnpilot_p_inoc_scaffold_2027_14
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9578..10108)
DNA (531bp) protein (177aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI000237515D
tripartite ATP-independent periplasmic transporter DctQ Tax=GWA2_Burkholderiales_64_37_curated
tripartite ATP-independent periplasmic transporter DctQ
scnpilot_p_inoc_scaffold_2027_15
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10105..10620)
DNA (516bp) protein (172aa)
Carbohydrate kinase n=1 Tax=Acidovorax sp. KKS102 RepID=K0ID02_9BURK
carbohydrate kinase
Carbohydrate kinase {ECO:0000313|EMBL:AFU47186.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2027_16
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10797..11825
DNA (1029bp) protein (343aa)
LacI family transcriptional regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0C3X9_9BURK
LacI family transcriptional regulator {ECO:0000313|EMBL:EHL20672.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
LacI family transcriptional regulator
scnpilot_p_inoc_scaffold_2027_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11832..12479)
DNA (648bp) protein (216aa)
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2] id=12552589 bin=BDI species=Duganella zoogloeoides genus=Duganella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
maleylacetoacetate isomerase; K01800 maleylacetoacetate isomerase [EC:5.2.1.2] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
maiA; maleylacetoacetate isomerase (EC:5.2.1.2)
scnpilot_p_inoc_scaffold_2027_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12489..13511)
DNA (1023bp) protein (341aa)
fumarylacetoacetate hydrolase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
fumarylacetoacetate (FAA) hydrolase id=12552588 bin=BDI tax=BDI organism_group=Betaproteobacteria
Fumarylacetoacetate hydrolase family protein
scnpilot_p_inoc_scaffold_2027_19
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13611..14609)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0B0U1_9RHOO rbh
C4-dicarboxylate transport system C4-dicarboxylate-binding protein Tax=CG_Rhodocyc_01
TRAP-type C4-dicarboxylate transport system, periplasmic component
scnpilot_p_inoc_scaffold_2027_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14644..14886)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AUA6_9RHOO
TRAP-type C4-dicarboxylate transport system, large permease component
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:CDM22972.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenacea
Displaying 20 items

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