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scnpilot_p_inoc_scaffold_188

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Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_188_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
Transposase IS3/IS911 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TR52_ALIDB
transposase is3/is911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:AEB84790.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicy
scnpilot_p_inoc_scaffold_188_2
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(148..417)
DNA (270bp) protein (90aa)
Phage integrase n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DK9_DECAR
Phage integrase family protein {ECO:0000313|EMBL:KIN88236.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;
Phage integrase
scnpilot_p_inoc_scaffold_188_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(638..2266)
DNA (1629bp) protein (543aa)
gmp synthase, large subunit (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase [glutamine-hydrolyzing] n=2 Tax=Alicycliphilus denitrificans RepID=E8TYB1_ALIDB rbh
scnpilot_p_inoc_scaffold_188_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2326..3801)
DNA (1476bp) protein (492aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.37)
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Acidovorax RepID=A1W8Y1_ACISJ
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
scnpilot_p_inoc_scaffold_188_5
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3880..4398
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KIX4_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
hypothetical protein
scnpilot_p_inoc_scaffold_188_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4416..4763)
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WGU7_DELAC
UPF0125 protein HMPREF9701_04268 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acid
hypothetical protein
scnpilot_p_inoc_scaffold_188_7
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4756..5196)
DNA (441bp) protein (147aa)
Cyclase/dehydrase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV98_9BURK
cyclase/dehydrase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
cyclase/dehydrase
scnpilot_p_inoc_scaffold_188_8
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5318..5791
DNA (474bp) protein (158aa)
SsrA-binding protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV97_9BURK
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
smpB; ssrA-binding protein
scnpilot_p_inoc_scaffold_188_9
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5898..6263
DNA (366bp) protein (122aa)
Secreted repeat protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0V7_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
hypothetical protein
scnpilot_p_inoc_scaffold_188_10
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6281..6787
DNA (507bp) protein (169aa)
RNA polymerase sigma-70 factor, ECF subfamily n=2 Tax=Delftia acidovorans RepID=S2WSQ0_DELAC
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
ECF subfamily RNA polymerase sigma-24 factor
scnpilot_p_inoc_scaffold_188_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6801..7619
DNA (819bp) protein (273aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WGV1_DELAC rbh
putative transmembrane anti-sigma factor Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
putative transmembrane anti-sigma factor
scnpilot_p_inoc_scaffold_188_12
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7626..8717)
DNA (1092bp) protein (364aa)
3-hydroxyisobutyryl-CoA hydrolase n=1 Tax=Acidovorax radicis RepID=UPI0002376255
3-hydroxyisobutyryl-CoA hydrolase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
3-hydroxyisobutyryl-CoA hydrolase
scnpilot_p_inoc_scaffold_188_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8714..9610)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3N8_ACIDE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
hypothetical protein
scnpilot_p_inoc_scaffold_188_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9621..11444)
DNA (1824bp) protein (608aa)
GTP-binding protein TypA n=2 Tax=Alicycliphilus denitrificans RepID=E8TYA0_ALIDB rbh
GTP-binding protein TypA {ECO:0000313|EMBL:AEB84514.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus de
GTP-binding protein TypA
scnpilot_p_inoc_scaffold_188_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11458..12447)
DNA (990bp) protein (330aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9L3_ALIDK
tRNA pseudouridine synthase b
scnpilot_p_inoc_scaffold_188_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12440..12820)
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=1 Tax=Acidovorax sp. (strain JS42) RepID=RBFA_ACISJ
rbfA; ribosome-binding factor A
Ribosome-binding factor A {ECO:0000255|HAMAP-Rule:MF_00003}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (
scnpilot_p_inoc_scaffold_188_17
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12830..15673)
DNA (2844bp) protein (948aa)
Translation initiation factor IF-2 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=IF2_ACIAC
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
infB; translation initiation factor IF-2
scnpilot_p_inoc_scaffold_188_18
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15698..17182)
DNA (1485bp) protein (495aa)
NusA antitermination factor n=1 Tax=Acidovorax sp. KKS102 RepID=K0IBH6_9BURK
nusa antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
NusA antitermination factor
scnpilot_p_inoc_scaffold_188_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17261..17842)
DNA (582bp) protein (194aa)
Ribosome maturation factor RimP n=2 Tax=Delftia RepID=RIMP_DELAS
hypothetical protein
Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acido
scnpilot_p_inoc_scaffold_188_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18021..18425)
DNA (405bp) protein (135aa)
Thioredoxin domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1EE34_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
hypothetical protein
scnpilot_p_inoc_scaffold_188_21
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18542..21094
DNA (2553bp) protein (851aa)
HAD superfamily P-type ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
HAD superfamily P-type ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] id=12550586 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
P-type (transporting) HAD superfamily ATPase (EC:3.6.3.8)
scnpilot_p_inoc_scaffold_188_22
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21105..22706)
DNA (1602bp) protein (534aa)
ABC transporter related protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4A6_ACIDE
ABC transporter related protein {ECO:0000313|EMBL:EER60709.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax del
ABC transporter-like protein
scnpilot_p_inoc_scaffold_188_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22718..23764)
DNA (1047bp) protein (349aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6J0_ALIDK
ABC transporter permease
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEB85381.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" so
scnpilot_p_inoc_scaffold_188_24
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23748..24779)
DNA (1032bp) protein (344aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax sp. NO-1 RepID=H0BU37_9BURK
binding-protein-dependent transport system inner membrane protein Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
binding-protein-dependent transport system inner membrane protein
scnpilot_p_inoc_scaffold_188_25
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24877..25335)
DNA (459bp) protein (153aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTD8_ALIDB
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:GAO22855.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" sour
scnpilot_p_inoc_scaffold_188_26
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25401..27170)
DNA (1770bp) protein (590aa)
Extracellular solute-binding protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BU36_9BURK
Extracellular solute-binding protein {ECO:0000313|EMBL:EHL24128.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovora
extracellular solute-binding protein
scnpilot_p_inoc_scaffold_188_27
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27279..28079
DNA (801bp) protein (267aa)
enoyl-ACP reductase (NADH) (EC:1.3.1.9)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6J4_ALIDK
scnpilot_p_inoc_scaffold_188_28
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28101..29009
DNA (909bp) protein (303aa)
DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] id=12550577 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
DNA ligase (EC:6.5.1.1)
ATP dependent DNA ligase {ECO:0000313|EMBL:EER60704.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Ac
scnpilot_p_inoc_scaffold_188_29
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29125..31494)
DNA (2370bp) protein (790aa)
lysine decarboxylase n=1 Tax=Acidovorax radicis RepID=UPI00023782C0
lysine decarboxylase Tax=GWA2_Burkholderiales_64_37_curated
lysine decarboxylase
scnpilot_p_inoc_scaffold_188_30
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31635..32060
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T499_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER60702.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii
hypothetical protein
Displaying items 1-30 of 141 in total

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