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scnpilot_p_inoc_scaffold_1311

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1311_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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142..669
DNA (528bp) protein (176aa)
Transcription termination/antitermination factor NusG n=3 Tax=Parabacteroides RepID=A7AFP3_9PORP
Transcription termination/antitermination factor NusG {ECO:0000313|EMBL:CDD14761.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; en
nusg antitermination factor
scnpilot_p_inoc_scaffold_1311_2
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

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685..1917
DNA (1233bp) protein (411aa)
response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Tax=GWB2_Bacteroidetes_41_8_curated
AraC family transcriptional regulator
Helix-turn-helix-domain containing protein AraC type id=4402575 bin=GWA2_Flavobacterium_35_26 species=Pedobacter heparinus genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
scnpilot_p_inoc_scaffold_1311_3
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1925..2743)
DNA (819bp) protein (273aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=411901 species="Bacteria; Bacte
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZK33_9BACE rbh
scnpilot_p_inoc_scaffold_1311_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2745..3617)
DNA (873bp) protein (291aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F0_PALPW rbh
ATP-nad/acox kinase
scnpilot_p_inoc_scaffold_1311_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3729..4442
DNA (714bp) protein (238aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279,
Pyridoxine 5'-phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E9_PALPW rbh
scnpilot_p_inoc_scaffold_1311_6
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4473..5147
DNA (675bp) protein (225aa)
Putative biopolymer transport protein ExbB n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7JCU1_9PORP
biopolymer transport protein ExbB; K03561 biopolymer transport protein ExbB Tax=CG_Paludi_01
biopolymer transporter ExbB
scnpilot_p_inoc_scaffold_1311_7
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5154..5573
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:144 RepID=R5Y8X1_9BACE
transport energizing protein, ExbD/TolR family; K03559 biopolymer transport protein ExbD Tax=CG_Paludi_01
transport energizing protein, ExbD/TolR family
scnpilot_p_inoc_scaffold_1311_8
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5586..6299
DNA (714bp) protein (238aa)
TonB family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E8_PALPW
tonb family protein Tax=CG_Paludi_01
tonb family protein
scnpilot_p_inoc_scaffold_1311_9
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6301..6849
DNA (549bp) protein (183aa)
DJ-1 family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E7_PALPW
dj-1 family protein
DJ-1 family protein {ECO:0000313|EMBL:ADQ80991.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (
scnpilot_p_inoc_scaffold_1311_10
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6894..8003)
DNA (1110bp) protein (370aa)
Methylmalonyl-CoA mutase metallochaperone MeaB n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T167_PALPW rbh
methylmalonyl-CoA mutase metallochaperone meab
Methylmalonyl-CoA mutase metallochaperone MeaB {ECO:0000313|EMBL:ADQ78448.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Pal
scnpilot_p_inoc_scaffold_1311_11
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8010..8402)
DNA (393bp) protein (131aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=B7BFY6_9PORP
hypothetical protein Tax=CG_Paludi_01
hypothetical protein
scnpilot_p_inoc_scaffold_1311_12
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

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comp(8477..9244)
DNA (768bp) protein (256aa)
UPF0246 protein Palpr_0152 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0F5_PALPW
Uncharacterized protein {ECO:0000313|EMBL:KKS67409.1}; TaxID=1618928 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_6.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1311_13
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

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comp(9304..9678)
DNA (375bp) protein (125aa)
Bacterial nucleoid protein Hbs n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E6_PALPW
Bacterial nucleoid protein Hbs {ECO:0000313|EMBL:KKS67410.1}; TaxID=1618928 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_6.;"
nucleoid protein hbs
scnpilot_p_inoc_scaffold_1311_14
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9770..10567
DNA (798bp) protein (266aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E5_PALPW rbh
rhomboid family protein Tax=CG_Paludi_01
rhomboid family protein
scnpilot_p_inoc_scaffold_1311_15
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10579..11466
DNA (888bp) protein (296aa)
Rhomboid family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E4_PALPW rbh
rhomboid family protein Tax=CG_Paludi_01
rhomboid family protein
scnpilot_p_inoc_scaffold_1311_16
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11489..12595
DNA (1107bp) protein (369aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E3_PALPW rbh
endonuclease/exonuclease/phosphatase Tax=CG_Paludi_01
endonuclease/exonuclease/phosphatase
scnpilot_p_inoc_scaffold_1311_17
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12621..12998
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E2_PALPW
glycine cleavage system h protein
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter
scnpilot_p_inoc_scaffold_1311_18
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13040..13522
DNA (483bp) protein (161aa)
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8E1_PALPW
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
scnpilot_p_inoc_scaffold_1311_19
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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13527..14786
DNA (1260bp) protein (420aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=CG_Paludi_01
Phosphoglycerate kinase n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6ATB0_9BACE rbh
phosphoglycerate kinase
scnpilot_p_inoc_scaffold_1311_20
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15119..15613
DNA (495bp) protein (165aa)
Redoxin domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T152_PALPW
redoxin domain-containing protein
Redoxin domain protein {ECO:0000313|EMBL:ADQ78433.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludiba
scnpilot_p_inoc_scaffold_1311_21
GWE2_Bacteroidetes_39_28_curated, Bacteroidia, Bacteroidetes, Bacteria

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15665..16270
DNA (606bp) protein (202aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=1885852 bin=GWE2_Bacteroidetes_39_28 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_39_28 organism_group=Bacteroidetes
alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen Tax=GWE2_Bacteroidetes_39_28_curated
alkyl hydroperoxide reductase/thiol specific antioxidant/mal allergen
scnpilot_p_inoc_scaffold_1311_22
unknown

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comp(16528..16692)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1311_23
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16749..18197
DNA (1449bp) protein (483aa)
Putative uncharacterized protein n=2 Tax=Dysgonomonas RepID=F8X3H9_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK05392.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
transposase
scnpilot_p_inoc_scaffold_1311_24
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18210..18758
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036F4DF8
ORF6N domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EFR56865.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
scnpilot_p_inoc_scaffold_1311_25
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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19051..19572
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RHU6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA56189.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1311_26
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(19626..20153)
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X1V9_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK06093.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
putative anti-restriction protein
scnpilot_p_inoc_scaffold_1311_27
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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20615..22012
DNA (1398bp) protein (466aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8WXN0_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EGK04438.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas mossii DSM 22
hypothetical protein
scnpilot_p_inoc_scaffold_1311_28
Porphyromonas macacae, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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22039..22872
DNA (834bp) protein (278aa)
exc; putative transposon excision protein (EC:5.99.1.2)
Putative transposon excision protein n=1 Tax=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) RepID=Q5LFX0_BACFN
DNA topoisomerase I {ECO:0000313|EMBL:KGN76386.1}; TaxID=28115 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas macacae.;"
Displaying 28 items

View Taxonomy