ggKbase home page

scnpilot_p_inoc_scaffold_203

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_203_1
R_Gammaproteobacteria_60_43, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..99
DNA (99bp) protein (33aa)
transposase Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_60_43_curated
scnpilot_p_inoc_scaffold_203_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(260..646)
DNA (387bp) protein (129aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase
aspartate decarboxylase n=1 Tax=Dyella japonica RepID=UPI00030163B2
aspartate decarboxylase
scnpilot_p_inoc_scaffold_203_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(741..1586)
DNA (846bp) protein (282aa)
pantothenate synthetase (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAA
Pantothenate synthetase n=1 Tax=Rhodanobacter denitrificans RepID=I4WYD3_9GAMM
scnpilot_p_inoc_scaffold_203_4
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1586..2416)
DNA (831bp) protein (277aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopa
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Dyella japonica RepID=UPI000300D006
scnpilot_p_inoc_scaffold_203_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2529..4142)
DNA (1614bp) protein (538aa)
Integral membrane protein MviN n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5X9_9GAMM rbh
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhoda
integral membrane protein MviN
scnpilot_p_inoc_scaffold_203_6
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4244..4507
DNA (264bp) protein (88aa)
30S ribosomal protein S20 id=2579557 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=GWF1_Xanthomonadales_69_6_curated
SSU ribosomal protein S20P
scnpilot_p_inoc_scaffold_203_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4573..5625)
DNA (1053bp) protein (351aa)
GTPase CgtA n=1 Tax=Dyella ginsengisoli RepID=UPI00034BBE4E
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomo
Obg family GTPase CgtA
scnpilot_p_inoc_scaffold_203_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5827..6084)
DNA (258bp) protein (86aa)
50S ribosomal protein L27 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031D3A8B
LSU ribosomal protein L27P
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotr
scnpilot_p_inoc_scaffold_203_9

Not on your lists


comp(6097..6417)
DNA (321bp) protein (107aa)
Ribosomal protein L21 n=1 Tax=mine drainage metagenome RepID=T0ZLA0_9ZZZZ
Ribosomal protein L21 {ECO:0000313|EMBL:EQD45257.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
rplU; 50S ribosomal protein L21
scnpilot_p_inoc_scaffold_203_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6570..7721)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WA07_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96298.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
sterol desaturase
scnpilot_p_inoc_scaffold_203_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7949..9016
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5H9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94720.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_203_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9003..9887
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WCA3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97094.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
Arginase family
scnpilot_p_inoc_scaffold_203_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9903..11114)
DNA (1212bp) protein (404aa)
DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5I1_9GAMM rbh
DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:EIL94722.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="R
putative PLP-dependent enzyme possibly involved in cell wall biogenesis
scnpilot_p_inoc_scaffold_203_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11122..11532)
DNA (411bp) protein (137aa)
Putative transmembrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WR34_9GAMM
cation/cationic drug transporter Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
cation/cationic drug transporter
scnpilot_p_inoc_scaffold_203_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11532..11906)
DNA (375bp) protein (125aa)
membrane protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034B4358
EamA-like transporter family Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
EamA-like transporter family
scnpilot_p_inoc_scaffold_203_16
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12152..15013
DNA (2862bp) protein (954aa)
excinuclease ABC subunit A n=1 Tax=Rudaea cellulosilytica RepID=UPI0003772EE0
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
excinuclease ABC subunit A
scnpilot_p_inoc_scaffold_203_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15133..15651
DNA (519bp) protein (173aa)
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W4K4_9GAMM
4-hydroxybenzoyl-CoA thioesterase {ECO:0000313|EMBL:EIL94395.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhoda
thioesterase
scnpilot_p_inoc_scaffold_203_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15728..16450)
DNA (723bp) protein (241aa)
glycoprotease n=1 Tax=Dyella japonica RepID=UPI0002DEC893
glycoprotease
Glycoprotease {ECO:0000313|EMBL:AIF47130.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_p_inoc_scaffold_203_19
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16527..17708)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPU2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EAR22097.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mob
hypothetical protein
scnpilot_p_inoc_scaffold_203_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17855..19933)
DNA (2079bp) protein (693aa)
helicase n=1 Tax=Dyella japonica RepID=UPI0002FF1E48
Helicase {ECO:0000313|EMBL:KGI78639.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
helicase
scnpilot_p_inoc_scaffold_203_21
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20025..20816
DNA (792bp) protein (264aa)
Two component transcriptional regulator, AraC family n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFX67710.1}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taean
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_203_22
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

20954..23287
DNA (2334bp) protein (778aa)
Putative uncharacterized protein n=2 Tax=Chloroflexus RepID=A9WJ94_CHLAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY34371.1}; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus
scnpilot_p_inoc_scaffold_203_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

23322..23696
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WUM0_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
conserved exported protein of unknown function
scnpilot_p_inoc_scaffold_203_24
unknown

Not on your lists

23656..23937
DNA (282bp) protein (94aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_203_25
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

23979..25280
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI00036EAEC1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC17268.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera v
scnpilot_p_inoc_scaffold_203_26
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25368..26372
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Burkholderia vietnamiensis (strain G4 / LMG 22486) RepID=A4JU19_BURVG
Aspergillopepsin-2 {ECO:0000313|EMBL:EWM11073.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
scnpilot_p_inoc_scaffold_203_27
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26584..28071
DNA (1488bp) protein (496aa)
Uncharacterized protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KTY4_STRRC rbh
multicopper oxidase, type 2 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
multicopper oxidase, type 2
scnpilot_p_inoc_scaffold_203_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28165..28593
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W567_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94608.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_p_inoc_scaffold_203_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28714..29664
DNA (951bp) protein (317aa)
cysteine synthase (EC:2.5.1.47)
Pyridoxal-5'-phosphate-dependent enzyme subunit beta n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWA8_9GAMM
Pyridoxal-5'-phosphate-dependent enzyme subunit beta {ECO:0000313|EMBL:EIL91499.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobact
scnpilot_p_inoc_scaffold_203_30
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

29797..30267
DNA (471bp) protein (157aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Kted
alkylhydroperoxidase AhpD family core domain protein id=12556323 bin=CNBR_ACIDO species=Rhodanobacter denitrificans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alkylhydroperoxidase AhpD family core domain protein
Displaying items 1-30 of 150 in total

View Taxonomy