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scnpilot_p_inoc_scaffold_80

Search features with annotation key words

Displaying items 91-120 of 577 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_80_91
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113822..114085
DNA (264bp) protein (88aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 small subunit n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HAC4_9SPHN
exodeoxyribonuclease VII small subunit
scnpilot_p_inoc_scaffold_80_92
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114101..115003
DNA (903bp) protein (301aa)
Geranylgeranyl pyrophosphate synthase n=1 Tax=Novosphingobium sp. AP12 RepID=J2H4C1_9SPHN rbh
Geranyltranstransferase {ECO:0000313|EMBL:EZP84905.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
farnesyl-diphosphate synthase
scnpilot_p_inoc_scaffold_80_93
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115076..115612
DNA (537bp) protein (179aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0GYL4_9SPHN
phosphopantetheine adenylyltransferase
scnpilot_p_inoc_scaffold_80_94
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115725..116441
DNA (717bp) protein (239aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
peptidylprolyl isomerase (EC:5.2.1.8)
peptidylprolyl isomerase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4880B rbh
scnpilot_p_inoc_scaffold_80_95
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116449..117483
DNA (1035bp) protein (345aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWE2_9SPHN rbh
S-adenosylmethionine tRNA ribosyltransferase
scnpilot_p_inoc_scaffold_80_96
unknown

Not on your lists

117576..118043
DNA (468bp) protein (156aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_80_97
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118059..118808)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G638_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55569.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_80_98
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118811..119701)
DNA (891bp) protein (297aa)
Putative metallo-beta-lactamase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S6T5_9SPHN
putative metallo-beta-lactamase
Putative metallo-beta-lactamase {ECO:0000313|EMBL:AGH50643.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
scnpilot_p_inoc_scaffold_80_99
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

119788..120915
DNA (1128bp) protein (376aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YMC0_9SPHN
scnpilot_p_inoc_scaffold_80_100
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121160..121411)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G640_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS49127.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_80_101
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(121521..122132)
DNA (612bp) protein (204aa)
30S ribosomal protein S4 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS4_NOVAD rbh
rpsD; 30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000255|HAMAP-Rule:MF_01306}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
scnpilot_p_inoc_scaffold_80_102
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122345..123118)
DNA (774bp) protein (258aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256
tRNA/rRNA methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G643_NOVAD rbh
tRNA/rRNA methyltransferase
scnpilot_p_inoc_scaffold_80_103
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123115..123450)
DNA (336bp) protein (112aa)
Transcriptional repressor NrdR n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y0_9SPHN
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
nrdR; transcriptional regulator NrdR
scnpilot_p_inoc_scaffold_80_104
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123583..124881)
DNA (1299bp) protein (433aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAM
UPI0003D5DD84 related cluster n=1 Tax=unknown RepID=UPI0003D5DD84 rbh
glyA; serine hydroxymethyltransferase
scnpilot_p_inoc_scaffold_80_105
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(124903..125340)
DNA (438bp) protein (146aa)
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:CCW18646.1}; EC=5.3.1.6 {ECO:0000313|EMBL:CCW18646.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingo
rpiB; ribose 5-phosphate isomerase B (EC:5.3.1.6)
UPI0003D6976B related cluster n=1 Tax=unknown RepID=UPI0003D6976B
scnpilot_p_inoc_scaffold_80_106
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125557..127590)
DNA (2034bp) protein (678aa)
RNA polymerase sigma factor RpoD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Y4_9SPHN rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
RNA polymerase sigma factor RpoD
scnpilot_p_inoc_scaffold_80_107
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127603..129510)
DNA (1908bp) protein (636aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=48936 species="Bacteria; Proteobacteri
DNA primase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G652_NOVAD rbh
DNA primase
scnpilot_p_inoc_scaffold_80_108
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(129512..129964)
DNA (453bp) protein (151aa)
GatB/Yqey n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G653_NOVAD
hypothetical protein
GatB/Yqey {ECO:0000313|EMBL:ABD26670.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticiv
scnpilot_p_inoc_scaffold_80_109
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130120..131286
DNA (1167bp) protein (389aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209, ECO:0000313|EMBL:CCA93284.1};; Carbamoyl-phosphate synthetase glutamine chain {
Carbamoyl-phosphate synthase small chain n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPD2_9SPHN
scnpilot_p_inoc_scaffold_80_110
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

131286..134600
DNA (3315bp) protein (1105aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria;
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WIJ0_9SPHN rbh
scnpilot_p_inoc_scaffold_80_111
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

134699..135193
DNA (495bp) protein (165aa)
Transcription elongation factor GreA n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C8B7_9SPHN
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1348853 species="Bacteri
transcription elongation factor GreA
scnpilot_p_inoc_scaffold_80_112
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135307..135528)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G657_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS49109.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_80_113
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(135648..136022)
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPD8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93290.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_p_inoc_scaffold_80_114
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136019..136393)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WIJ7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ80141.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_p_inoc_scaffold_80_115
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(136475..137008)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G661_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS49105.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_80_116
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137180..138466
DNA (1287bp) protein (429aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Z5_9SPHN rbh
scnpilot_p_inoc_scaffold_80_117
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138548..139075)
DNA (528bp) protein (176aa)
Regulatory protein, MarR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G663_NOVAD
regulatory protein, MarR
Regulatory protein, MarR {ECO:0000313|EMBL:ABD26660.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
scnpilot_p_inoc_scaffold_80_118
unknown

Not on your lists

comp(139190..139354)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_80_119
Shewanella sp. ANA-3, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

139682..141769
DNA (2088bp) protein (696aa)
peptidase M13 n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD103A
peptidase M13
Peptidase M13 {ECO:0000313|EMBL:ABK46740.1}; TaxID=94122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. (strain ANA-3).;"
scnpilot_p_inoc_scaffold_80_120
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(141828..142250)
DNA (423bp) protein (141aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6Q2_9SPHN
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
6,7-dimethyl-8-ribityllumazine synthase
Displaying items 91-120 of 577 in total

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