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scnpilot_p_inoc_scaffold_1006

Search features with annotation key words

Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1006_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..118
DNA (117bp) protein (39aa)
bifunctional D-altronate/D-mannonate dehydratase n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DC0B99
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:KHS44966.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
mandelate racemase/muconate lactonizing protein
scnpilot_p_inoc_scaffold_1006_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(177..1589)
DNA (1413bp) protein (471aa)
major facilitator transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B44DD0 rbh
D-xylose proton-symporter XylE {ECO:0000313|EMBL:CCW19377.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingob
sugar transporter
scnpilot_p_inoc_scaffold_1006_3
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1610..2467)
DNA (858bp) protein (286aa)
gluconolaconase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5F125 rbh
Gluconolaconase {ECO:0000313|EMBL:EQB31839.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense
putative gluconolactonase
scnpilot_p_inoc_scaffold_1006_4
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2467..3243)
DNA (777bp) protein (259aa)
3-oxoacyl-ACP reductase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6E147 rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KER35619.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium luc
SDR-family protein
scnpilot_p_inoc_scaffold_1006_5
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3240..4370)
DNA (1131bp) protein (377aa)
fumarylacetoacetate hydrolase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B62DF4 rbh
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ETI64347.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
fumarylacetoacetate hydrolase family protein
scnpilot_p_inoc_scaffold_1006_6
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4636..6414
DNA (1779bp) protein (593aa)
Scaffold15, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31002.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KIS31002.1};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadal
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Novosphingobium sp. AP12 RepID=J2FXU7_9SPHN rbh
dihydroxy-acid dehydratase
scnpilot_p_inoc_scaffold_1006_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6451..8055)
DNA (1605bp) protein (535aa)
Sulfatase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICG5_9SPHN rbh
sulfatase
Sulfatase {ECO:0000313|EMBL:CCA89990.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;
scnpilot_p_inoc_scaffold_1006_8
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8073..8699)
DNA (627bp) protein (209aa)
UPI0003D6950D related cluster n=1 Tax=unknown RepID=UPI0003D6950D
Maleylacetoacetate isomerase {ECO:0000313|EMBL:ETI64247.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobiu
maleylacetoacetate isomerase
scnpilot_p_inoc_scaffold_1006_9
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8692..9387)
DNA (696bp) protein (232aa)
UPI0003D6705C related cluster n=1 Tax=unknown RepID=UPI0003D6705C rbh
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:ETI64246.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobi
fumarylacetoacetate (FAA) hydrolase
scnpilot_p_inoc_scaffold_1006_10
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9389..10435)
DNA (1047bp) protein (349aa)
gentisate 1,2-dioxygenase (EC:1.13.11.4)
UPI0003D618F8 related cluster n=1 Tax=unknown RepID=UPI0003D618F8 rbh
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:ETI64245.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium s
scnpilot_p_inoc_scaffold_1006_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10640..11683
DNA (1044bp) protein (348aa)
Sal operon transcriptional repressor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MNK0_9SPHN rbh
Sal operon transcriptional repressor {ECO:0000313|EMBL:CCW18299.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
LacI-family transcriptional regulator
scnpilot_p_inoc_scaffold_1006_12
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11684..13003)
DNA (1320bp) protein (440aa)
MFS transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0ILM7_9SPHN rbh
MFS transporter {ECO:0000313|EMBL:EQB29720.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense
MFS transporter
scnpilot_p_inoc_scaffold_1006_13
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13032..14525)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GWS0_9SPHN rbh
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31732.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
hypothetical protein
scnpilot_p_inoc_scaffold_1006_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14525..16915)
DNA (2391bp) protein (797aa)
TonB-dependent receptor n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM77_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:CCW18300.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
outer membrane receptor (OMR) family protein
scnpilot_p_inoc_scaffold_1006_15
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17291..19372
DNA (2082bp) protein (694aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HXN1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB16833.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
glycoside hydrolase
scnpilot_p_inoc_scaffold_1006_16
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19764..20735
DNA (972bp) protein (324aa)
cysE; serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDI4_9SPHN rbh
Serine O-acetyltransferase {ECO:0000313|EMBL:EGD57275.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
scnpilot_p_inoc_scaffold_1006_17
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20732..21742)
DNA (1011bp) protein (337aa)
CysB family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A58CA9 rbh
bacterial regulatory helix-turn-helix, lysR family protein
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:AIP24768.1}; Cys regulon transcriptional activator {ECO:0000313|EMBL:ABC39046.1}; TaxID=271848 species="Bacteria; Proteoba
scnpilot_p_inoc_scaffold_1006_18
unknown

Not on your lists

22025..23212
DNA (1188bp) protein (396aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_19
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23470..24300
DNA (831bp) protein (277aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rul
protein involved in catabolism of external DNA n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00036E6301 rbh
hypothetical protein
scnpilot_p_inoc_scaffold_1006_20
unknown

Not on your lists

24661..24948
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_21
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25610..26986
DNA (1377bp) protein (459aa)
integrase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BCE4 rbh
integrase family protein Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
integrase family protein
scnpilot_p_inoc_scaffold_1006_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27247..27639
DNA (393bp) protein (131aa)
Uncharacterized protein family UPF0150 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F2U5_SPHCR
CopG family transcriptional regulator
CopG family transcriptional regulator {ECO:0000313|EMBL:AJP72942.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
scnpilot_p_inoc_scaffold_1006_23
unknown

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27723..27986
DNA (264bp) protein (88aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_24
unknown

Not on your lists

27979..28407
DNA (429bp) protein (143aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_25
unknown

Not on your lists

28407..28844
DNA (438bp) protein (146aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_26
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28940..29416
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C349
Uncharacterized protein {ECO:0000313|EMBL:EZP70746.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas pau
scnpilot_p_inoc_scaffold_1006_27
unknown

Not on your lists

29471..30070
DNA (600bp) protein (200aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1006_28
unknown

Not on your lists

30157..30366
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR22105.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
scnpilot_p_inoc_scaffold_1006_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30545..30910
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EB91_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEZ12872.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoi
scnpilot_p_inoc_scaffold_1006_30
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30903..31166
DNA (264bp) protein (88aa)
replicative DNA helicase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B56FED
DNA helicase
DNA helicase {ECO:0000313|EMBL:AHE51699.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenen
Displaying 30 items

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