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scnpilot_p_inoc_scaffold_187_90

Organism: SCNpilot_P_inoc_Novosphingobium_62_280

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(88046..89560)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 72.7
  • Coverage: 509.0
  • Bit_score: 720
  • Evalue 3.40e-205
RNA polymerase sigma-54 factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM8_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 72.7
  • Coverage: 509.0
  • Bit_score: 720
  • Evalue 1.20e-204
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="No similarity UNIPROT
DB: UniProtKB
  • Identity: 73.1
  • Coverage: 517.0
  • Bit_score: 721
  • Evalue 7.60e-205

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1515
ATGGCGCTGGGGCCGCGCCTCGATCTACGCCAGACACAGTCGCTGGTGATGACGCCGCAGCTGCAGCAGGCGATCAAGCTGCTCACGCTGTCCAATCTGGAGATCGAGGCGTTTATCGGCGATGCGCTGGACGCCAATCCTCTGCTCGAAATGGGCGAGGCGCTGCCTGTCGAACCCGTCGAGATCGAGGCGCGCCGCACCAGCCTTGAAAGCAGCCCCTGCGACCAGTTGATCGGCGAAGGCATGGCCGCCGAGGACCGCCCGCTGGACATCAGCGCCGAGACGCTCGATGTGGACCGGGACACGGGCGATGGCGGGGGTGATACGCCCGAACGCTATGAACCGGCCTTTGAGGGCGAAGCAACCATCTCCGGCGGCGGCGAAGCCCCGGCGATGGAGGAATATGGCGCCTTTGACGAAACGCTGGCCGAGCATCTGCATGGTCAGATCGGCGCGGTGGTGCGCGATCCCAAGCTGGCTTTCATCGCCCGCTTCCTGATCGATCAATTGGACGATGCGGGCTACCTGGCCGCTTCCCTGCGCGAAATCGCCATGGACCTGCAAGTCTCGCCCGCCGAGGTCGAGGCCGCGCTGGCATTGGTCCAATCGCTCGACCCCACCGGCGTTGGCGCGCGCAGCCTGTCGGAATGTATCGCGTTGCAGGCCAGGGAAGCGGATCGCTACGATCCGGCGATGGCCCGGCTAATCGACAATCTGGAAATGATCGCGCGCGGCGAATTGCCCCGCCTGCGCCGGATGTGCGGCGTAGATGAGGAAGATTTCGCCGATATGCTGGCCGAATTGCGCGGCTATGATCCCAAGCCGGGCCTGCGCTATGGCGGCGGGGCGGCCGCGCCCGTGGTGCCCGACATCCTGATCACCGCGCGCGCCGATGGCGGCTGGAATGTCGCGCTCAATCAGGCCACCCTGCCCAAGCTGATCCTCAATCGCAGCTATTATCTGGAAATGCGCGGGGCCTGTGCGGGGAAAACCGCAGGCAAGGAGGATCGCGGGTGGTTGTCGGAAAAGCTGGCCGATGCCAACTGGCTGGTCAAAGCGCTGGACCAGCGGCAGAAGACGATCCTGAAAGTGGCCAGCGAATTGGTGCGCCAGCAGGAAGGCTTTTTCCGCCGCGGCGTCAGCCAGTTGAAGCCGCTGACATTGCGCGCGGTGGCTGAAACGGTGGGGCTGCATGAATCGACCGTCAGCCGCGTGACAAGCAACAAATATCTGATGTGCGAGCGGGGCACGTTTGAGCTGAAATATTTCTTCACCAGCGGCGTCTCGGGCGCCGATGGCGAAGGCGTTTCGGCCGAGGCGGTCAAGGCCGCGATCAAGCAATTGATCGACAACGAAGACCCGAAAAAGATCCTGTCGGACGACACGCTGGTCGATCTGCTCAAGGCCAAAGGCTTTGAACTGGCCCGTCGCACCGTGGCAAAATATCGCGAGGCGATAGGGCTTGGCTCCTCGGTGCAGCGCCGCCGTCAGAAAGCGCTGAGCGGGAAACGTTAG
PROTEIN sequence
Length: 505
MALGPRLDLRQTQSLVMTPQLQQAIKLLTLSNLEIEAFIGDALDANPLLEMGEALPVEPVEIEARRTSLESSPCDQLIGEGMAAEDRPLDISAETLDVDRDTGDGGGDTPERYEPAFEGEATISGGGEAPAMEEYGAFDETLAEHLHGQIGAVVRDPKLAFIARFLIDQLDDAGYLAASLREIAMDLQVSPAEVEAALALVQSLDPTGVGARSLSECIALQAREADRYDPAMARLIDNLEMIARGELPRLRRMCGVDEEDFADMLAELRGYDPKPGLRYGGGAAAPVVPDILITARADGGWNVALNQATLPKLILNRSYYLEMRGACAGKTAGKEDRGWLSEKLADANWLVKALDQRQKTILKVASELVRQQEGFFRRGVSQLKPLTLRAVAETVGLHESTVSRVTSNKYLMCERGTFELKYFFTSGVSGADGEGVSAEAVKAAIKQLIDNEDPKKILSDDTLVDLLKAKGFELARRTVAKYREAIGLGSSVQRRRQKALSGKR*