ggKbase home page

scnpilot_p_inoc_scaffold_187

Search features with annotation key words

Displaying items 1-30 of 147 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_187_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(689..2815)
DNA (2127bp) protein (709aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B650C7 rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65761.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sph
TonB-dependent receptor-like protein
scnpilot_p_inoc_scaffold_187_2
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2917..3672
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002E76DC6
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KFL48402.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sp
TonB-dependent siderophore receptor
scnpilot_p_inoc_scaffold_187_3
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3677..3988
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9KZP8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFL48401.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
hypothetical protein
scnpilot_p_inoc_scaffold_187_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3985..5559
DNA (1575bp) protein (525aa)
PepSY-associated TM helix domain-containing protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C1U0_9SPHN rbh
PepSY-associated TM helix domain-containing protein {ECO:0000313|EMBL:EIZ77420.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingo
PepSY-associated TM helix domain-containing protein
scnpilot_p_inoc_scaffold_187_5
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5556..5825
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WB87_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ77421.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
Putative membrane protein
scnpilot_p_inoc_scaffold_187_6

Not on your lists

6126..7538
DNA (1413bp) protein (471aa)
ISPsy6 transposase n=5 Tax=Pseudomonas aeruginosa RepID=K1BDY6_PSEAI
TnpA, transposase {ECO:0000313|EMBL:ADU90902.1}; Transposase {ECO:0000313|EMBL:CAG30881.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
tnpA; transposase
scnpilot_p_inoc_scaffold_187_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7744..8463)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B46851 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53161.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_187_8
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8435..8809)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B4A6
Uncharacterized protein {ECO:0000313|EMBL:KEO86770.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
hypothetical protein
scnpilot_p_inoc_scaffold_187_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9046..9975)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D866_BRAJP rbh
transporter
Uncharacterized protein {ECO:0000313|EMBL:BAL12545.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
scnpilot_p_inoc_scaffold_187_10
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10207..11634
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DEA036 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHL24574.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter me
GAF sensor-containing diguanylate cyclase
scnpilot_p_inoc_scaffold_187_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11577..12239
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDK8_9SPHN
Histone acetyltransferase HPA2 and related acetyltransferases {ECO:0000313|EMBL:GAO56357.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae;
hypothetical protein
scnpilot_p_inoc_scaffold_187_12
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12249..14018)
DNA (1770bp) protein (590aa)
Diguanylate cyclase/phosphodiesterase domain 2 (EAL) n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TH8_NITEU rbh
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase domain 2 (EAL) {ECO:0000313|EMBL:CAD85820.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomona
scnpilot_p_inoc_scaffold_187_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14295..17063)
DNA (2769bp) protein (923aa)
TonB-denpendent receptor n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A13CB2 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE55667.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
TonB-dependent receptor
scnpilot_p_inoc_scaffold_187_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17316..18632
DNA (1317bp) protein (439aa)
glucarate transporter n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B3147C rbh
D-glucarate permease {ECO:0000313|EMBL:CCW18821.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japoni
d-galactonate transporter
scnpilot_p_inoc_scaffold_187_15
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18629..20449
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630283 rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW18820.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium jap
hypothetical protein
scnpilot_p_inoc_scaffold_187_16
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20446..21333)
DNA (888bp) protein (296aa)
Transcriptional regulatory protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MTW8_9SPHN rbh
Transcriptional regulatory protein {ECO:0000313|EMBL:CCW18818.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphi
transcriptional regulator, LysR family
scnpilot_p_inoc_scaffold_187_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21353..22285)
DNA (933bp) protein (311aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MT20_9SPHN rbh
5-dehydro-4-deoxyglucarate dehydratase
scnpilot_p_inoc_scaffold_187_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22514..23515
DNA (1002bp) protein (334aa)
peptidase T n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B40F10
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:EIL93760.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobact
peptidase S51 dipeptidase E
scnpilot_p_inoc_scaffold_187_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23562..24020
DNA (459bp) protein (153aa)
GreA/GreB family elongation factor n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZC11_9SPHN
GreA/GreB family elongation factor {ECO:0000313|EMBL:EGD57852.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="N
GreA/GreB family elongation factor
scnpilot_p_inoc_scaffold_187_20
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24116..26146
DNA (2031bp) protein (677aa)
UPI0003D6332B related cluster n=1 Tax=unknown RepID=UPI0003D6332B rbh
Carbon starvation protein A {ECO:0000313|EMBL:ETI64491.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
cstA; carbon starvation protein CstA
scnpilot_p_inoc_scaffold_187_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26143..26319
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0J0P2_9SPHN
Putative small protein yjiX {ECO:0000313|EMBL:EZP73480.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
hypothetical protein
scnpilot_p_inoc_scaffold_187_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26321..26647)
DNA (327bp) protein (109aa)
ArsR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5AC48
ArsR family transcriptional regulator {ECO:0000313|EMBL:EGD59638.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
ArsR family transcriptional regulator
scnpilot_p_inoc_scaffold_187_23
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26696..27067)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002F35025
ArsR family transcriptional regulator
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_187_24
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27465..28322)
DNA (858bp) protein (286aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-
pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C8D0_9SPHN rbh
scnpilot_p_inoc_scaffold_187_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28436..29248
DNA (813bp) protein (271aa)
ATPase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5B3_9SPHN rbh
Chromosome partitioning ATPase-like protein {ECO:0000313|EMBL:KHS46869.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
chromosome partitioning ATPase-like
scnpilot_p_inoc_scaffold_187_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29250..29540
DNA (291bp) protein (97aa)
Heat shock protein DnaJ-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G321_NOVAD
heat shock protein DnaJ-like protein
Heat shock protein DnaJ-like protein {ECO:0000313|EMBL:ABD27752.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosph
scnpilot_p_inoc_scaffold_187_27
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29537..31003
DNA (1467bp) protein (489aa)
manB; phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G819_9SPHN
Phosphomannomutase {ECO:0000313|EMBL:KER36450.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowe
scnpilot_p_inoc_scaffold_187_28
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31000..33432
DNA (2433bp) protein (811aa)
Helicase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZH2_9SPHN
Helicase {ECO:0000313|EMBL:EQB18492.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindanicla
helicase
scnpilot_p_inoc_scaffold_187_29
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33499..33948)
DNA (450bp) protein (150aa)
Biopolymer transport protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FX60_9SPHN
Biopolymer transport protein {ECO:0000313|EMBL:EJL21805.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobiu
biopolymer transport exbD transmembrane protein
scnpilot_p_inoc_scaffold_187_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33978..34514)
DNA (537bp) protein (179aa)
Biopolymer transport protein ExbD n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKF1_9SPHN
Biopolymer transport protein ExbD {ECO:0000313|EMBL:GAD49030.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="N
biopolymer transport ExbD protein
Displaying items 1-30 of 147 in total

View Taxonomy