ggKbase home page

scnpilot_p_inoc_scaffold_187

Search features with annotation key words

Displaying items 91-120 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_187_91
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89587..90372)
DNA (786bp) protein (262aa)
ABC transporter related protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBM9_NOVAD
Lipopolysaccharide ABC transporter, ATP-binding protein lptB {ECO:0000313|EMBL:GAO54434.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; N
ABC transporter-like protein
scnpilot_p_inoc_scaffold_187_92
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90568..90996
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIX1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO89839.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter l
hypothetical protein
scnpilot_p_inoc_scaffold_187_93
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91083..92429
DNA (1347bp) protein (449aa)
Modulator protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZI2_9SPHN rbh
Modulator protein {ECO:0000313|EMBL:EQB17468.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium l
modulator protein
scnpilot_p_inoc_scaffold_187_94
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92469..93008)
DNA (540bp) protein (180aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1219045 species="Ba
Inorganic pyrophosphatase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQG8_9SPHN rbh
ppa; inorganic pyrophosphatase
scnpilot_p_inoc_scaffold_187_95
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93148..93825)
DNA (678bp) protein (226aa)
membrane protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00038172AA
Uncharacterized protein {ECO:0000313|EMBL:GAO54440.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_187_96
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93826..95772)
DNA (1947bp) protein (649aa)
Glycyl aminopeptidase, Metallo peptidase, MEROPS family M61 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBN5_NOVAD rbh
PDZ domain family protein {ECO:0000313|EMBL:GAO54441.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
glycyl aminopeptidase
scnpilot_p_inoc_scaffold_187_97
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


95924..97162
DNA (1239bp) protein (413aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:00
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=SYH_NOVAD rbh
scnpilot_p_inoc_scaffold_187_98
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

97163..98227
DNA (1065bp) protein (355aa)
Peptide chain release factor 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RF1_NOVAD rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
prfA; peptide chain release factor 1
scnpilot_p_inoc_scaffold_187_99
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98238..99092
DNA (855bp) protein (285aa)
Release factor glutamine methyltransferase {ECO:0000313|EMBL:AKH43639.1}; EC=2.1.1.- {ECO:0000313|EMBL:AKH43639.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonada
Release factor glutamine methyltransferase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WF29_9SPHN rbh
SAM-dependent methyltransferase
scnpilot_p_inoc_scaffold_187_100
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99327..100325
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6N6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS46969.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_p_inoc_scaffold_187_101
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

100388..102028
DNA (1641bp) protein (547aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=1219035 species
Apolipoprotein N-acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GBP0_NOVAD
apolipoprotein N-acyltransferase
scnpilot_p_inoc_scaffold_187_102
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102070..103296
DNA (1227bp) protein (409aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WC12_9SPHN rbh
scnpilot_p_inoc_scaffold_187_103
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

103469..104251
DNA (783bp) protein (261aa)
Universal stress protein UspA n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I275_9SPHN
Universal stress protein UspA {ECO:0000313|EMBL:KHK89501.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
hypothetical protein
scnpilot_p_inoc_scaffold_187_104
unknown

Not on your lists

104378..104944
DNA (567bp) protein (189aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_187_105
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(104822..105925)
DNA (1104bp) protein (368aa)
Small-conductance mechanosensitive channel n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N5T4_ERYLH
small-conductance mechanosensitive channel
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:ABC64957.1}; TaxID=314225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" so
scnpilot_p_inoc_scaffold_187_106
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105925..108774)
DNA (2850bp) protein (950aa)
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Novosphingobium sp. AP12 RepID=J2GVP4_9SPHN rbh
DNA polymerase I {ECO:0000313|EMBL:EJL26978.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp
scnpilot_p_inoc_scaffold_187_107
unknown

Not on your lists

108894..109472
DNA (579bp) protein (193aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_187_108
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(109399..110436)
DNA (1038bp) protein (346aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=1096930 species="Bacteria; Proteobacter
beta-lactamase (EC:3.5.2.6)
Beta-lactamase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HQ21_9SPHN rbh
scnpilot_p_inoc_scaffold_187_109
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110622..112259)
DNA (1638bp) protein (546aa)
molecular chaperone GroEL n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B52218 rbh
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=158500 speci
groEL; molecular chaperone GroEL
scnpilot_p_inoc_scaffold_187_110
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112306..112593)
DNA (288bp) protein (96aa)
10 kDa chaperonin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=CH10_NOVAD
chaperonin Cpn10
10 kDa chaperonin {ECO:0000255|HAMAP-Rule:MF_00580}; GroES protein {ECO:0000255|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000255|HAMAP-Rule:MF_00580}; TaxID=279238 species="Bacteria; Proteobacteria; A
scnpilot_p_inoc_scaffold_187_111
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112729..114114)
DNA (1386bp) protein (462aa)
Putative efflux protein, MATE family n=1 Tax=Novosphingobium sp. AP12 RepID=J2GVP8_9SPHN rbh
Putative efflux protein, MATE family {ECO:0000313|EMBL:EJL26983.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosp
multidrug resistance protein
scnpilot_p_inoc_scaffold_187_112
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114207..115619)
DNA (1413bp) protein (471aa)
Heavy metal cation tricomponent efflux outer membrane porin ZneC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I8_9SPHN rbh
RND efflux system of outer membrane lipoprotein, nodT family {ECO:0000313|EMBL:GAO55355.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; N
metal transporter
scnpilot_p_inoc_scaffold_187_113
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(115616..118795)
DNA (3180bp) protein (1060aa)
Heavy metal efflux pump CzcA n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7I9_9SPHN rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:EGD59380.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
cytochrome C peroxidase
scnpilot_p_inoc_scaffold_187_114
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118792..120051)
DNA (1260bp) protein (420aa)
Secretion protein HlyD n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7J0_9SPHN rbh
Secretion protein HlyD {ECO:0000313|EMBL:EGD59381.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
secretion protein HlyD
scnpilot_p_inoc_scaffold_187_115
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

120305..121192
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB48_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO54283.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_187_116
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121193..121939)
DNA (747bp) protein (249aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WCZ1_9SPHN rbh
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EIZ78063.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
scnpilot_p_inoc_scaffold_187_117
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(121936..122160)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB45_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD24928.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_p_inoc_scaffold_187_118
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122378..123715)
DNA (1338bp) protein (446aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1609758 species="Bacter
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VS27_9SPHN rbh
scnpilot_p_inoc_scaffold_187_119
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

123866..125137
DNA (1272bp) protein (424aa)
Na+/H+ dicarboxylate symporter n=1 Tax=Novosphingobium sp. AP12 RepID=J2FV05_9SPHN rbh
Na+/H+ dicarboxylate symporter {ECO:0000313|EMBL:EJL20995.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingob
sodium:dicarboxylate symporter
scnpilot_p_inoc_scaffold_187_120
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(125134..125712)
DNA (579bp) protein (193aa)
RNA polymerase sigma70 n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E6802D
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAD49245.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
FecI-like sigma-24 factor
Displaying items 91-120 of 147 in total

View Taxonomy