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scnpilot_p_inoc_scaffold_782

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_782_1

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comp(3..134)
DNA (132bp) protein (44aa)
Translation elongation factor Tu (Fragment) n=3 Tax=mine drainage metagenome RepID=T1B1M0_9ZZZZ
Translation elongation factor Tu {ECO:0000313|EMBL:EQD60710.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.
translation elongation factor 1A (EF-1A/EF-Tu)
scnpilot_p_inoc_scaffold_782_2
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1099..1584)
DNA (486bp) protein (162aa)
Acyl-CoA hydrolase n=2 Tax=Rhodanobacter RepID=I4WG24_9GAMM
Acyl-CoA hydrolase {ECO:0000313|EMBL:KJV34315.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.
acyl-CoA hydrolase
scnpilot_p_inoc_scaffold_782_3
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1602..2693)
DNA (1092bp) protein (364aa)
GTP-binding protein YchF n=1 Tax=Rudaea cellulosilytica RepID=UPI0003624E06
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiag
ychF; GTP-binding protein
scnpilot_p_inoc_scaffold_782_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2808..3389)
DNA (582bp) protein (194aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
Peptidyl-tRNA hydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W536_9GAMM
peptidyl-tRNA hydrolase
scnpilot_p_inoc_scaffold_782_5
Arenimonas malthae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3436..4092)
DNA (657bp) protein (219aa)
50S ribosomal protein L25 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7US18_PSEUP
50S ribosomal protein L25/general stress protein Ctc
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1384054 s
scnpilot_p_inoc_scaffold_782_6
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4253..5221)
DNA (969bp) protein (323aa)
prs; ribose-phosphate diphosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase id=2611925 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_782_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5435..6301)
DNA (867bp) protein (289aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKN2_9GAMM
scnpilot_p_inoc_scaffold_782_8
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6298..6885)
DNA (588bp) protein (196aa)
Outer-membrane lipoprotein LolB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJ25_9GAMM
Outer-membrane lipoprotein LolB {ECO:0000256|HAMAP-Rule:MF_00233, ECO:0000256|SAAS:SAAS00002103}; Flags: Precursor;; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadal
lolB; outer membrane lipoprotein LolB
scnpilot_p_inoc_scaffold_782_9
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6912..8651)
DNA (1740bp) protein (580aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003765CE2 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX14297.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_p_inoc_scaffold_782_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8897..10192
DNA (1296bp) protein (432aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|Rule
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T0_9GAMM
glutamyl-tRNA reductase
scnpilot_p_inoc_scaffold_782_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10290..11372
DNA (1083bp) protein (361aa)
peptide chain release factor 1 n=1 Tax=Dyella japonica RepID=UPI000308AFB2 rbh
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
scnpilot_p_inoc_scaffold_782_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11440..13503)
DNA (2064bp) protein (688aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUZ4_9GAMM rbh
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:EIL91035.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.
dipeptidyl aminopeptidase/acylaminoacyl peptidase
scnpilot_p_inoc_scaffold_782_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13691..15343
DNA (1653bp) protein (551aa)
Aminopeptidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRS1_9GAMM rbh
Aminopeptidase {ECO:0000313|EMBL:EIM02163.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydan
putative aminopeptidase
scnpilot_p_inoc_scaffold_782_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15525..16397
DNA (873bp) protein (291aa)
Thioredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WTF0_9GAMM
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AGG88284.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.
scnpilot_p_inoc_scaffold_782_15
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16410..16877
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003817EF2
Uncharacterized protein {ECO:0000313|EMBL:KFN41419.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
hypothetical protein
scnpilot_p_inoc_scaffold_782_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17012..17434
DNA (423bp) protein (141aa)
Globin n=1 Tax=Rhodanobacter denitrificans RepID=I4WME8_9GAMM
truncated hemoglobin
Truncated hemoglobin {ECO:0000313|EMBL:AGG87715.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denit
scnpilot_p_inoc_scaffold_782_17
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17447..17893)
DNA (447bp) protein (149aa)
17 kDa surface antigen n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMP0_9GAMM
17 kDa surface antigen
Tax=BJP_08E140C01_Xanthomonadales_64_42
scnpilot_p_inoc_scaffold_782_18
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18027..19556)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AE68_COLFT rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK63917.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivor
scnpilot_p_inoc_scaffold_782_19
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19603..20229)
DNA (627bp) protein (209aa)
Shikimate kinase {ECO:0000313|EMBL:KJE76899.1}; EC=2.7.1.71 {ECO:0000313|EMBL:KJE76899.1};; TaxID=1121877 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrim
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C471E
scnpilot_p_inoc_scaffold_782_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20364..21044
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003823B9C
hypothetical protein Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
hypothetical protein
scnpilot_p_inoc_scaffold_782_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21177..23273
DNA (2097bp) protein (699aa)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K9_9GAMM rbh
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL94750.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanoba
peptidase
scnpilot_p_inoc_scaffold_782_22
Saccharophagus degradans, Saccharophagus, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23413..24378
DNA (966bp) protein (322aa)
Putative uncharacterized protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21NT4_SACD2 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD79645.1}; TaxID=203122 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus.;" source="Saccharophagus
scnpilot_p_inoc_scaffold_782_23
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24527..25801
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CGV9_MYXFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI63668.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococ
scnpilot_p_inoc_scaffold_782_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25925..28768
DNA (2844bp) protein (948aa)
RNA polymerase-associated protein RapA {ECO:0000256|SAAS:SAAS00017181}; EC=3.6.4.- {ECO:0000256|SAAS:SAAS00017178};; Flags: Fragment;; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacte
helicase SNF2 n=1 Tax=Dyella ginsengisoli RepID=UPI00034AA934
DNA/RNA helicase, superfamily II, SNF2 family
scnpilot_p_inoc_scaffold_782_25
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28887..29750)
DNA (864bp) protein (288aa)
acetyl-CoA carboxylase carboxyl transferase subunit beta n=1 Tax=Dyella ginsengisoli RepID=UPI00034C9C6C
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltr
acetyl-CoA carboxylase carboxyltransferase subunit alpha
scnpilot_p_inoc_scaffold_782_26
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29824..30636)
DNA (813bp) protein (271aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=767434 species="B
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000380B0BC
tryptophan synthase subunit alpha
scnpilot_p_inoc_scaffold_782_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30633..31853)
DNA (1221bp) protein (407aa)
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
Tryptophan synthase beta chain n=2 Tax=Rhodanobacter denitrificans RepID=M4NCT4_9GAMM rbh
scnpilot_p_inoc_scaffold_782_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31867..32493)
DNA (627bp) protein (209aa)
phosphoribosylanthranilate isomerase (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_0013
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQE3_THISH
scnpilot_p_inoc_scaffold_782_29
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32490..33257)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A89FE rbh
pseudouridylate synthase I
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_782_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33360..35942)
DNA (2583bp) protein (861aa)
FimV N-terminal domain protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NLA0_9GAMM rbh
FimV N-terminal domain protein
FimV N-terminal domain protein {ECO:0000313|EMBL:AGG88496.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;
Displaying items 1-30 of 40 in total

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