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scnpilot_p_inoc_scaffold_1246

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1246_1
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..594
DNA (594bp) protein (198aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7T8V7_9DELT
chorismate synthase
scnpilot_p_inoc_scaffold_1246_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(577..2673)
DNA (2097bp) protein (699aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKN7_9SPHN rbh
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67439.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sph
scnpilot_p_inoc_scaffold_1246_3
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2721..3221)
DNA (501bp) protein (167aa)
MarR family transcriptional regulator n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A2A46F
Strain LMCP11 contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27650.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;
putative MarR family transcriptional regulator
scnpilot_p_inoc_scaffold_1246_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3341..4837)
DNA (1497bp) protein (499aa)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKD4_XANP2 rbh
PutA protein {ECO:0000313|EMBL:BAQ44539.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
methylmalonate-semialdehyde dehydrogenase
scnpilot_p_inoc_scaffold_1246_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4856..5974)
DNA (1119bp) protein (373aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
ald; alanine dehydrogenase (EC:1.4.1.1)
alanine dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037C8EDC rbh
scnpilot_p_inoc_scaffold_1246_6
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6009..7325)
DNA (1317bp) protein (439aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
Omega-amino acid-pyruvate aminotransferase (EC:2.6.1.18)
Beta alanine--pyruvate transaminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD25_9SPHN rbh
scnpilot_p_inoc_scaffold_1246_7
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7707..8414
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS13_SPHAL
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1246_8
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8464..9813
DNA (1350bp) protein (450aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
L-glutamine synthetase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU35_SPHAL rbh
glutamate--ammonia ligase
scnpilot_p_inoc_scaffold_1246_9
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9815..11086
DNA (1272bp) protein (424aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
FAD dependent oxidoreductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU36_SPHAL rbh
FAD dependent oxidoreductase
scnpilot_p_inoc_scaffold_1246_10
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11083..12429
DNA (1347bp) protein (449aa)
aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
aminotransferase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A8E03 rbh
aminotransferase class-III family protein
scnpilot_p_inoc_scaffold_1246_11
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12435..13823
DNA (1389bp) protein (463aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
L-glutamine synthetase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU38_SPHAL rbh
glutamate--ammonia ligase
scnpilot_p_inoc_scaffold_1246_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13851..14750)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI000363DBEB
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM31677.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="In
bacterial regulatory helix-turn-helix, lysR family protein
scnpilot_p_inoc_scaffold_1246_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14928..16040
DNA (1113bp) protein (371aa)
Putrescine-binding periplasmic protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD31_9SPHN rbh
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" sourc
extracellular solute-binding protein
scnpilot_p_inoc_scaffold_1246_14
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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16076..16978
DNA (903bp) protein (301aa)
Transporter n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3U9_CAUCN rbh
spermidine/putrescine ABC transporter permease
Spermidine/putrescine ABC transporter, permease protein {ECO:0000313|EMBL:AAK25098.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobact
scnpilot_p_inoc_scaffold_1246_15
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16975..17823
DNA (849bp) protein (283aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU41_SPHAL rbh
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABF52831.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
scnpilot_p_inoc_scaffold_1246_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17828..18955
DNA (1128bp) protein (376aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USU8_9SPHN rbh
spermidine/putrescine ABC transporter ATP-binding subunit
scnpilot_p_inoc_scaffold_1246_17
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19066..20496
DNA (1431bp) protein (477aa)
aminobutyraldehyde dehydrogenase (EC:1.2.1.19); K00137 aminobutyraldehyde dehydrogenase [EC:1.2.1.19] Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
UPI0003CF55C7 related cluster n=1 Tax=unknown RepID=UPI0003CF55C7
aminobutyraldehyde dehydrogenase
scnpilot_p_inoc_scaffold_1246_18
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20501..21232
DNA (732bp) protein (244aa)
Peptidase C26 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU44_SPHAL rbh
peptidase C26
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_1246_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21349..22725
DNA (1377bp) protein (459aa)
Aminotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD35_9SPHN rbh
Aminotransferase {ECO:0000313|EMBL:ENY81401.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.
putative aminotransferase
scnpilot_p_inoc_scaffold_1246_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22692..23645)
DNA (954bp) protein (318aa)
Putative deoxyribodipyrimidine photolyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z9_NOVAD
deoxyribodipyrimidine photolyase
Putative deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:ABD25674.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; No
scnpilot_p_inoc_scaffold_1246_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23824..24396
DNA (573bp) protein (191aa)
Transcriptional regulator, LuxR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z7_NOVAD
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABD25676.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
Displaying 21 items

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