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scnpilot_p_inoc_scaffold_2054

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2054_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..648)
DNA (648bp) protein (216aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteri
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZV03_9SPHN
Holliday junction ATP-dependent DNA helicase RuvB
scnpilot_p_inoc_scaffold_2054_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1219..1644
DNA (426bp) protein (142aa)
endonuclease n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD09AC
ruvC; crossover junction endodeoxyribonuclease RuvC; K07461 putative endonuclease Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
excinuclease ABC subunit C
scnpilot_p_inoc_scaffold_2054_3
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1680..2288)
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLE3_9SPHN rbh
ruvA; Holliday junction DNA helicase RuvA
scnpilot_p_inoc_scaffold_2054_4
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2400..3464
DNA (1065bp) protein (355aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
aroC; chorismate synthase (EC:4.2.3.5)
chorismate synthase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A5790A rbh
scnpilot_p_inoc_scaffold_2054_5
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3627..4193
DNA (567bp) protein (189aa)
Alkyl hydroperoxide reductase subunit C n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKV0_9SPHN rbh
Alkyl hydroperoxide reductase subunit C {ECO:0000313|EMBL:GAD49210.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
alkyl hydroperoxide reductase
scnpilot_p_inoc_scaffold_2054_6
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4297..5886
DNA (1590bp) protein (530aa)
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:AKH42669.1}; EC=1.8.1.- {ECO:0000313|EMBL:AKH42669.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
Alkyl hydroperoxide reductase subunit F n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J7E9_9SPHN rbh
alkyl hydroperoxide reductase rbh
scnpilot_p_inoc_scaffold_2054_7
unknown

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comp(6112..6567)
DNA (456bp) protein (152aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2054_8
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6669..7262)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A379_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49208.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_2054_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7273..8475)
DNA (1203bp) protein (401aa)
Membrane-bound lytic murein transglycosylase A n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLD7_9SPHN rbh
Membrane-bound lytic murein transglycosylase A {ECO:0000313|EMBL:GAD49207.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium
MltA
scnpilot_p_inoc_scaffold_2054_10
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8482..9150)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WFI8_9SPHN
Tim44-like domain protein {ECO:0000313|EMBL:AKH42673.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alter
hypothetical protein
scnpilot_p_inoc_scaffold_2054_11
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9412..9933
DNA (522bp) protein (174aa)
Protein-export protein SecB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKU5_9SPHN
Protein-export protein SecB {ECO:0000313|EMBL:AKH42674.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alt
preprotein translocase subunit
scnpilot_p_inoc_scaffold_2054_12
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9959..11563
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00036E55B6 rbh
membrane protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
scnpilot_p_inoc_scaffold_2054_13
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11828..12850
DNA (1023bp) protein (341aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A373_9SPHN rbh
scnpilot_p_inoc_scaffold_2054_14
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12991..13656
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLD4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD49202.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein
scnpilot_p_inoc_scaffold_2054_15
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13724..14023)
DNA (300bp) protein (100aa)
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33516.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
scnpilot_p_inoc_scaffold_2054_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14196..14663)
DNA (468bp) protein (156aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2HES8_9SPHN
scnpilot_p_inoc_scaffold_2054_17
unknown

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comp(14650..14739)
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 17 items

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