ggKbase home page

scnpilot_p_inoc_scaffold_1555_2

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 625..2064

Top 3 Functional Annotations

Value Algorithm Source
TolC-like protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZU73_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 69.7
  • Coverage: 485.0
  • Bit_score: 629
  • Evalue 3.50e-177
  • rbh
TolC-like protein {ECO:0000313|EMBL:GAD48914.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium t similarity UNIPROT
DB: UniProtKB
  • Identity: 69.7
  • Coverage: 485.0
  • Bit_score: 629
  • Evalue 4.90e-177
Type I secretion outer membrane protein, TolC similarity KEGG
DB: KEGG
  • Identity: 66.7
  • Coverage: 477.0
  • Bit_score: 600
  • Evalue 4.90e-169

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1440
ATGCCGGCGGGGGGGAGAAAGCTGGCTTTGCTGGCCGGCGCTGCGGCGCTTCTGTCGCCCGCGCCCGTGCTGGCGGATACGCTGAAGGATGCGCTGCTCGGCGCATATCAGACCAACCCCACCCTGCAGGCAGCTCGGGCAAATCAGCGCGCGACGGATGAAAACGTGCCGATCAACCGCGCCAGCGGCCTTCCCTCGGTCAGCGGCACGGCGACCTATACCGAACAGCTCAAGGAAACGACGCCCGATCCCACCGGTCTCTTCGCGGATCGTAGCCTTGCCGGATCGCTGACGCTTTCGGTGCCGGTCTATTCCGGCGGTTCGGTGCGAAACTCGGTCAACGCAGCCGAAACGCGCGTGAAAGCCGGACAGGCGAGCCTGCGCGCCACTGAAAGCAGCGTGTTCAGCCAGACGGTCACTGCCTATATGGATGTGATCCTCAACGAAGCGATCGTGAGCCTGTCGGCCAACAATGTCGACGTTCTCAGCGTCAACCTCCAGGCCACGAAGGACCGCTTCGAAATCGGCGATCTGACACGCACGGACGTGGCACAGTCCGAATCGCGTCTGGCACTGGCCCAGGGCGATCTGCGGACCGCGCGCGCCAATCTCTCTGCCGCGAGAGAGCGTTATATCCAGATCGTCGGCAAGCCGCCTGAAAATCTGGAAGCGCCCCCGCCTTTGCCGGGCCTTCCGGGCAGTCCGCAAGAAGCCGTTACAATCGCTCTTGATAACAATCCGGACCTGATCGCCGCGCGCGATGCGTCGAACGCCGCACGCTATGACATTGAGGTTGCGGGCGCAGGACGTCTGCCCAAGCTGGAGGTGTTCACTTCCGGCACCTATAGCGATCCGCTCGGTACCGTCACCAATGGCACCAGCGCGACGGGCGCCTCTGCGGGCGTGCGAGCCACGATCCCCCTGTTTCAGGGCGGTCGGCCCGCAGCACAGGAACGACAGGCTCAGGCACGATCCGCTGCTGCGCTGGAGCAGGAAATCGGCACCGAACGCGGCGTAATCTCACAGGTGCGCGCCGCCTTTTCGAGCCTGGAGGCCGCCAATTCCATCATCGCTTCAACTCAGACTGCCGTCAGCGCGGCAGAATTGAGCCTTGAAGGCGTGCGCGCGGAAAACACGGTCGGTAACCGCACCATCCTAGAAATCCTCAATGCCGAGCAGGAACTGCTCAGCGCCCGCGTCCAGCTGGTCACTGCCCGGCGCAATGCCTATGTCGCCGGCTTCACTCTGCTGGCCGCCATTGGTCGCGCCGAGGCGCGCGATCTGGGCCTGGGTGACGAAGGTGTGCTCTACGATCCGCAGGTCAATTATGACCGGGTAAAGGGTAAAATCTGGGACTGGTCGTTCGATCCCGATCCGGTCGCACAGTCAACGCGGACCGTTGACACGCCGACGCAGGACGGCGAAATTCCGAAACAATAG
PROTEIN sequence
Length: 480
MPAGGRKLALLAGAAALLSPAPVLADTLKDALLGAYQTNPTLQAARANQRATDENVPINRASGLPSVSGTATYTEQLKETTPDPTGLFADRSLAGSLTLSVPVYSGGSVRNSVNAAETRVKAGQASLRATESSVFSQTVTAYMDVILNEAIVSLSANNVDVLSVNLQATKDRFEIGDLTRTDVAQSESRLALAQGDLRTARANLSAARERYIQIVGKPPENLEAPPPLPGLPGSPQEAVTIALDNNPDLIAARDASNAARYDIEVAGAGRLPKLEVFTSGTYSDPLGTVTNGTSATGASAGVRATIPLFQGGRPAAQERQAQARSAAALEQEIGTERGVISQVRAAFSSLEAANSIIASTQTAVSAAELSLEGVRAENTVGNRTILEILNAEQELLSARVQLVTARRNAYVAGFTLLAAIGRAEARDLGLGDEGVLYDPQVNYDRVKGKIWDWSFDPDPVAQSTRTVDTPTQDGEIPKQ*