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scnpilot_p_inoc_scaffold_1777_2

Organism: SCNpilot_P_inoc_Novosphingobium_63_5

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: comp(1029..2546)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 71.6
  • Coverage: 507.0
  • Bit_score: 684
  • Evalue 2.10e-194
RNA polymerase sigma-54 factor n=1 Tax=Novosphingobium sp. AP12 RepID=J2GG87_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 70.8
  • Coverage: 510.0
  • Bit_score: 688
  • Evalue 6.70e-195
  • rbh
RNA polymerase sigma-54 factor 1 {ECO:0000313|EMBL:AKH43630.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 506.0
  • Bit_score: 699
  • Evalue 4.10e-198

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Taxonomy

Altererythrobacter atlanticus → Altererythrobacter → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1518
ATGGCCCTCGGCCCGCGCCTCGATCTTCGCCAGACGCAGTCGCTGGTGATGACGCCGCAATTGCAGCAGGCGATCAAGCTACTCGCGCTGTCGAACCTGGAGCTGGAAACCTTCATCGGCGAAGCGCTCGACGCGAACCCATTGCTCGATATTGGCAGCAGCGAAGGAAATGGCGCCGAAATCGCGGGCGAAGCGGAACAGCCCGAGGATCGCGCTGAGGCCTTGGCGGAAGGCGCGGCGACTGCCGACCAGCTGATGCTGGAAGGACGAGGAGAGGCGGACGCCCCGCTGGATCTCGATCCCGCCGCACTCGACATCGACCGTGACACAGGGGACAGTTCGGCCACCGCGCTGGGCGGGGAATATTCCGACTTCTCCGCAAGCGGGGGCGAGGAGGGGCCCACTATCGAGGAACGCGGCGGCGCCGCGCCGACTCTTGCCGAACATCTCGAAGCGCAGATCGGGGCGGCCGCGCCTGACCCGCAAAGCGCCTTCATCGCCCGCCATATCGTCGGCCTGCTGGACGAAGCCGGTTATCTCACCGTCCCCTTGCGCGAAATCGCAGGAGAACTGGGCATTTCGCTAGTCGATACGGAAGCCGGACTGGCCGTGGTCCAATCGCTCGACCCGACCGGGGTCGGCGCCCGCACTCTTTCGGAATGCCTCGCGCTGCAGGCGATCGAGGCGGATCGGCACGATCCGGCGATGGCCCGGCTGATCGACAATCTGGAACTGCTTGCCAAGGGCAGCTTTGCCCAGCTCAAGCGCATGTGCGGCGTCGATGACGAGGATTTCGCCGACATGCTGGCGGAGCTGCGCAACTACGATCCCAAGCCGGGCCTGAAATTCGGCGGCGGGGAAAGCGAACCCGTGGTGCCCGACATATTGGTGCGGGCCGGGCCCAAGGGCGGCTGGAACATCGCGCTCAATCAGGCCACTCTGCCCCGGCTGATCGTGAACCGCCCCTATTATGTCGAACTGCGTCAGGGCTGCCACGACAAGGCTTCGAAAGCATGGTTGAGCGAGAAGCTGGCCGATGCCAACTGGCTGATGAAGGCGCTCGACCAGCGGCAGAAGACAATCCTGAAAGTGACGGCGGAAATCGTGAAACAGCAGGAAGGCTTCTTCCGCAAGGGCGTGTCCGAACTACGCCCGCTGACGCTGCGGACGATAGCCGAAGCCATCGATATGCACGAATCGACCGTCAGCCGGGTGACCAGCAACAAATATCTCAATTGCGAGCGCGGAACGTTCGAGCTGAAATATTTCTTCACCTCCGGCGTTGCCTCCGCCGATGGGGACGGCGCGGTTTCGGCCGAGGCAGTGAAGGCGCAGATCCGCGCGCTGGTGGATGCGGAAAATCCGAAAAACATCCTTTCCGACGATACTTTGGTGGACCTGCTGAAAGAGAAGGGATTCGATCTCGCCCGGCGGACGGTCGCCAAATATCGCGAGGCGATCGGCATCGGGTCTTCGGTACAGCGCCGCCGCCAGAAAAAGCTGGAAGGTGTGGGCTAA
PROTEIN sequence
Length: 506
MALGPRLDLRQTQSLVMTPQLQQAIKLLALSNLELETFIGEALDANPLLDIGSSEGNGAEIAGEAEQPEDRAEALAEGAATADQLMLEGRGEADAPLDLDPAALDIDRDTGDSSATALGGEYSDFSASGGEEGPTIEERGGAAPTLAEHLEAQIGAAAPDPQSAFIARHIVGLLDEAGYLTVPLREIAGELGISLVDTEAGLAVVQSLDPTGVGARTLSECLALQAIEADRHDPAMARLIDNLELLAKGSFAQLKRMCGVDDEDFADMLAELRNYDPKPGLKFGGGESEPVVPDILVRAGPKGGWNIALNQATLPRLIVNRPYYVELRQGCHDKASKAWLSEKLADANWLMKALDQRQKTILKVTAEIVKQQEGFFRKGVSELRPLTLRTIAEAIDMHESTVSRVTSNKYLNCERGTFELKYFFTSGVASADGDGAVSAEAVKAQIRALVDAENPKNILSDDTLVDLLKEKGFDLARRTVAKYREAIGIGSSVQRRRQKKLEGVG*