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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 1701-1750 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_8179 4 5396 bp 68.90 3.92 84.34
scnpilot_p_inoc_scaffold_11787 4 4173 bp 59.88 3.45 58.73
scnpilot_p_inoc_scaffold_10964
Domain: Bacteria (75%)
4 8537 bp 68.62 4.62 77.63
scnpilot_p_inoc_scaffold_11788 4 4172 bp 62.10 3.74 89.88
scnpilot_p_inoc_scaffold_10965 4 4393 bp 59.87 4.23 67.74
scnpilot_p_inoc_scaffold_8181 4 6838 bp 67.53 4.98 88.84
scnpilot_p_inoc_scaffold_11021 4 4377 bp 62.05 4.90 76.42
scnpilot_p_inoc_scaffold_6813 4 6127 bp 59.54 4.58 84.46
scnpilot_p_inoc_scaffold_4638
Domain: Eukaryota (75%)
4 7980 bp 67.94 4.89 82.63
scnpilot_p_inoc_scaffold_4894
Domain: Eukaryota (50%)
4 7712 bp 56.55 4.86 64.15
scnpilot_p_inoc_scaffold_10198 4 5359 bp 71.10 5.26 87.83
scnpilot_p_inoc_scaffold_13406 4 7385 bp 55.07 3.78 35.87
scnpilot_p_inoc_scaffold_5686 4 6958 bp 67.02 5.04 80.58
scnpilot_p_inoc_scaffold_2505
Domain: Bacteria (50%)
4 12488 bp 66.06 5.35 90.62
scnpilot_p_inoc_scaffold_9770 4 4777 bp 63.85 3.27 61.29
scnpilot_p_inoc_scaffold_3979
Domain: Bacteria (75%)
4 8830 bp 67.35 4.30 77.77
scnpilot_p_inoc_scaffold_8956 4 5077 bp 60.04 4.05 64.05
scnpilot_p_inoc_scaffold_7244 4 5884 bp 58.96 4.13 76.94
scnpilot_p_inoc_scaffold_2765 4 11519 bp 60.60 4.22 88.08
scnpilot_p_inoc_scaffold_8958
Domain: Eukaryota (75%)
4 5076 bp 60.70 3.61 68.74
scnpilot_p_inoc_scaffold_5182 4 7412 bp 58.59 3.89 77.35
scnpilot_p_inoc_scaffold_6311 4 6466 bp 60.11 4.73 74.28
scnpilot_p_inoc_scaffold_6823
Domain: Eukaryota (50%)
4 8299 bp 66.13 4.55 87.41
scnpilot_p_inoc_scaffold_4392
Domain: Metazoa (50%)
4 8297 bp 65.99 4.81 72.42
scnpilot_p_inoc_scaffold_8704 4 5171 bp 60.12 3.54 66.31
scnpilot_p_inoc_scaffold_9520
Phylum: Proteobacteria (50%)
4 4859 bp 67.48 5.00 85.88
scnpilot_p_inoc_scaffold_8705
Domain: Eukaryota (60%)
5 5170 bp 55.36 4.64 63.19
scnpilot_p_inoc_scaffold_2770 5 11497 bp 64.00 4.64 72.18
scnpilot_p_inoc_scaffold_10978 5 4389 bp 64.73 4.44 83.05
scnpilot_p_inoc_scaffold_8962 5 5073 bp 53.07 4.55 32.53
scnpilot_p_inoc_scaffold_3475 5 9712 bp 61.58 4.29 68.76
scnpilot_p_inoc_scaffold_2004 5 15115 bp 66.42 4.71 89.02
scnpilot_p_inoc_scaffold_4908 5 7693 bp 58.74 4.09 81.23
scnpilot_p_inoc_scaffold_3733 5 9213 bp 58.60 4.48 59.49
scnpilot_p_inoc_scaffold_3989 5 8811 bp 55.82 4.17 78.99
scnpilot_p_inoc_scaffold_12334
Domain: Bacteria (80%)
5 4037 bp 54.52 3.27 100.55
scnpilot_p_inoc_scaffold_8454 5 5271 bp 54.39 4.07 57.94
scnpilot_p_inoc_scaffold_5190 5 7405 bp 64.28 4.86 89.82
scnpilot_p_inoc_scaffold_6319 5 6456 bp 55.98 4.44 32.16
scnpilot_p_inoc_scaffold_9273 5 4949 bp 56.54 3.61 57.77
scnpilot_p_inoc_scaffold_8715 5 5169 bp 62.20 4.90 65.64
scnpilot_p_inoc_scaffold_3996 5 8801 bp 59.41 4.70 86.96
scnpilot_p_inoc_scaffold_5196 5 7400 bp 58.96 4.22 72.65
scnpilot_p_inoc_scaffold_10221 5 4631 bp 56.12 3.56 41.07
scnpilot_p_inoc_scaffold_4920
Order: Pasteurellales (60%)
5 8865 bp 63.32 3.82 74.04
scnpilot_p_inoc_scaffold_1920 5 15687 bp 63.48 4.23 85.92
scnpilot_p_inoc_scaffold_7521 5 5740 bp 63.66 4.36 73.43
scnpilot_p_inoc_scaffold_6074 5 6640 bp 56.43 4.09 66.91
scnpilot_p_inoc_scaffold_12091 5 4104 bp 64.81 4.93 82.02
scnpilot_p_inoc_scaffold_9284 5 4944 bp 59.16 4.00 63.59
Displaying items 1701-1750 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.