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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 1801-1850 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_10519
Domain: Eukaryota (60%)
5 4532 bp 57.24 3.81 76.52
scnpilot_p_inoc_scaffold_3527 5 12520 bp 64.92 4.46 67.31
scnpilot_p_inoc_scaffold_10520 5 5651 bp 54.13 4.11 77.40
scnpilot_p_inoc_scaffold_3272 5 10162 bp 63.42 4.34 74.10
scnpilot_p_inoc_scaffold_3528 5 9618 bp 58.10 4.23 55.18
scnpilot_p_inoc_scaffold_11856 5 4156 bp 57.72 4.98 58.90
scnpilot_p_inoc_scaffold_9833 5 4761 bp 68.12 5.55 84.00
scnpilot_p_inoc_scaffold_8506 5 5248 bp 56.86 3.74 51.96
scnpilot_p_inoc_scaffold_12131 5 4091 bp 55.34 4.36 59.55
scnpilot_p_inoc_scaffold_8252 5 5365 bp 57.20 4.11 52.00
scnpilot_p_inoc_scaffold_6887 5 6088 bp 66.75 5.77 71.25
scnpilot_p_inoc_scaffold_6632 5 6245 bp 65.04 5.02 77.82
scnpilot_p_inoc_scaffold_12137 5 4089 bp 64.76 3.89 78.21
scnpilot_p_inoc_scaffold_8513 5 7543 bp 66.84 4.85 80.02
scnpilot_p_inoc_scaffold_3281 5 10142 bp 61.94 4.33 78.83
scnpilot_p_inoc_scaffold_4714 5 7892 bp 64.53 4.64 72.83
scnpilot_p_inoc_scaffold_7316 5 5844 bp 49.54 4.54 33.52
scnpilot_p_inoc_scaffold_7572 5 5716 bp 54.39 5.06 50.86
scnpilot_p_inoc_scaffold_5765
Domain: Eukaryota (80%)
5 6903 bp 57.37 4.00 69.27
scnpilot_p_inoc_scaffold_9848 5 4756 bp 64.44 5.11 84.46
scnpilot_p_inoc_scaffold_10281 5 4615 bp 59.83 4.10 87.95
scnpilot_p_inoc_scaffold_8521 5 7209 bp 64.67 4.22 94.80
scnpilot_p_inoc_scaffold_5001 5 7596 bp 55.69 4.46 43.44
scnpilot_p_inoc_scaffold_10029 5 6795 bp 64.81 4.33 87.81
scnpilot_p_inoc_scaffold_7325
Domain: Eukaryota (80%)
5 5838 bp 57.18 4.60 69.89
scnpilot_p_inoc_scaffold_6902 5 6681 bp 64.35 4.69 60.31
scnpilot_p_inoc_scaffold_2335 5 13246 bp 58.19 3.92 90.55
scnpilot_p_inoc_scaffold_8783 5 5143 bp 54.75 4.90 56.47
scnpilot_p_inoc_scaffold_5519 5 7110 bp 57.75 4.43 55.19
scnpilot_p_inoc_scaffold_9344 5 4915 bp 55.48 4.73 55.18
scnpilot_p_inoc_scaffold_9089 5 5021 bp 57.30 4.48 51.56
scnpilot_p_inoc_scaffold_14307
Order: Burkholderiales (60%)
5 6050 bp 57.06 2.70 82.07
scnpilot_p_inoc_scaffold_8020 5 5474 bp 64.14 5.26 66.09
scnpilot_p_inoc_scaffold_9348 5 4914 bp 48.90 4.24 31.07
scnpilot_p_inoc_scaffold_6396
Domain: Bacteria (60%)
5 6405 bp 63.20 4.89 84.26
scnpilot_p_inoc_scaffold_9093 5 5019 bp 63.16 4.33 64.08
scnpilot_p_inoc_scaffold_9605 5 4832 bp 55.86 4.19 64.88
scnpilot_p_inoc_scaffold_7077 5 5984 bp 61.26 4.16 60.76
scnpilot_p_inoc_scaffold_2343 5 13197 bp 57.50 4.47 70.68
scnpilot_p_inoc_scaffold_8791 5 5139 bp 70.52 4.99 89.67
scnpilot_p_inoc_scaffold_10296 5 4611 bp 56.84 4.36 54.72
scnpilot_p_inoc_scaffold_3560 5 9558 bp 55.78 3.80 55.15
scnpilot_p_inoc_scaffold_6656 5 6232 bp 67.63 4.67 88.67
scnpilot_p_inoc_scaffold_6146 5 6584 bp 61.18 4.53 69.03
scnpilot_p_inoc_scaffold_7850 5 5578 bp 62.60 4.09 57.87
scnpilot_p_inoc_scaffold_8539 5 5235 bp 61.20 4.44 62.52
scnpilot_p_inoc_scaffold_7083 5 5978 bp 63.30 5.70 87.27
scnpilot_p_inoc_scaffold_12421
Order: Burkholderiales (60%)
5 4021 bp 63.19 3.10 88.93
scnpilot_p_inoc_scaffold_4742 5 7870 bp 61.07 4.56 70.75
scnpilot_p_inoc_scaffold_8030 5 5472 bp 57.99 4.00 85.86
Displaying items 1801-1850 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.