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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2401-2450 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3809 7 9098 bp 61.66 4.50 65.68
scnpilot_p_inoc_scaffold_3298 7 10113 bp 49.54 3.84 59.45
scnpilot_p_inoc_scaffold_4734 7 7873 bp 65.83 5.60 77.05
scnpilot_p_inoc_scaffold_2856 7 11190 bp 56.58 3.99 51.42
scnpilot_p_inoc_scaffold_8281 7 6735 bp 61.23 4.34 72.16
scnpilot_p_inoc_scaffold_6913 7 6068 bp 59.08 3.63 57.75
scnpilot_p_inoc_scaffold_7337 7 5833 bp 59.27 3.81 97.21
scnpilot_p_inoc_scaffold_8026 7 5473 bp 57.72 4.55 77.89
scnpilot_p_inoc_scaffold_8282 7 5353 bp 53.17 3.92 70.00
scnpilot_p_inoc_scaffold_7851 7 5578 bp 62.53 4.22 64.97
scnpilot_p_inoc_scaffold_3308 7 10092 bp 62.31 4.58 65.19
scnpilot_p_inoc_scaffold_5532 7 7101 bp 53.56 4.56 55.89
scnpilot_p_inoc_scaffold_5790 7 6880 bp 48.11 5.49 58.26
scnpilot_p_inoc_scaffold_7600 7 5702 bp 54.47 4.34 66.56
scnpilot_p_inoc_scaffold_2609 7 12089 bp 64.77 4.27 88.69
scnpilot_p_inoc_scaffold_2354 7 13108 bp 60.54 4.54 71.38
scnpilot_p_inoc_scaffold_4235 7 8482 bp 61.13 4.46 73.64
scnpilot_p_inoc_scaffold_4491 7 9163 bp 57.37 5.03 70.82
scnpilot_p_inoc_scaffold_10565 7 4516 bp 53.99 3.95 55.54
scnpilot_p_inoc_scaffold_2871 7 11145 bp 59.03 4.32 73.89
scnpilot_p_inoc_scaffold_2873 7 11137 bp 61.10 3.84 76.88
scnpilot_p_inoc_scaffold_3065 7 10603 bp 59.01 5.02 96.45
scnpilot_p_inoc_scaffold_2618 7 12058 bp 62.47 4.58 63.74
scnpilot_p_inoc_scaffold_3834 7 9044 bp 62.53 4.63 67.11
scnpilot_p_inoc_scaffold_8043 7 6435 bp 57.68 4.15 78.46
scnpilot_p_inoc_scaffold_6932 7 11255 bp 65.13 4.76 79.59
scnpilot_p_inoc_scaffold_10061 7 4680 bp 57.86 3.40 66.28
scnpilot_p_inoc_scaffold_5293 7 7310 bp 61.46 4.68 70.83
scnpilot_p_inoc_scaffold_3585 7 9516 bp 64.02 5.17 78.59
scnpilot_p_inoc_scaffold_6428 7 6383 bp 62.59 4.21 87.70
scnpilot_p_inoc_scaffold_4765 7 7854 bp 59.83 4.85 77.27
scnpilot_p_inoc_scaffold_6685 7 6217 bp 51.76 3.81 75.90
scnpilot_p_inoc_scaffold_4768 7 7849 bp 53.83 4.43 72.35
scnpilot_p_inoc_scaffold_5561 7 7076 bp 53.65 3.67 78.52
scnpilot_p_inoc_scaffold_7628 7 5688 bp 58.58 5.33 70.41
scnpilot_p_inoc_scaffold_4517 7 8149 bp 59.52 4.97 72.93
scnpilot_p_inoc_scaffold_1773 7 16818 bp 57.67 4.44 62.15
scnpilot_p_inoc_scaffold_2127 7 14281 bp 57.98 4.73 65.71
scnpilot_p_inoc_scaffold_10338 7 4596 bp 57.29 4.08 64.43
scnpilot_p_inoc_scaffold_4267 7 8443 bp 61.12 4.90 81.94
scnpilot_p_inoc_scaffold_5315 7 7289 bp 60.19 4.47 64.29
scnpilot_p_inoc_scaffold_5316 7 7287 bp 57.65 4.41 67.52
scnpilot_p_inoc_scaffold_13549 7 4397 bp 62.20 4.16 64.95
scnpilot_p_inoc_scaffold_7638 7 5684 bp 59.01 4.09 74.42
scnpilot_p_inoc_scaffold_4273 7 8433 bp 52.41 3.98 46.42
scnpilot_p_inoc_scaffold_9657 7 5666 bp 70.63 4.87 61.21
scnpilot_p_inoc_scaffold_12466 7 4011 bp 57.69 4.71 72.25
scnpilot_p_inoc_scaffold_6706 7 8613 bp 62.29 4.41 62.28
scnpilot_p_inoc_scaffold_6709 7 6203 bp 60.00 5.01 60.45
scnpilot_p_inoc_scaffold_2150 7 14113 bp 58.22 4.29 77.76
Displaying items 2401-2450 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.