ggKbase | organisms

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %

Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 351-400 of 2836 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_15928	2	4297 bp	67.05	4.82	87.62
scnpilot_p_inoc_scaffold_7776	2	5614 bp	53.95	4.19	44.41
scnpilot_p_inoc_scaffold_12345 Species: Gossypium raimondii (50%)	2	4035 bp	59.88	5.32	75.02
scnpilot_p_inoc_scaffold_11817 Species: Galleria mellonella (50%)	2	4165 bp	67.01	5.11	98.18
scnpilot_p_inoc_scaffold_4410 Species: Haemophilus pittmaniae (50%)	2	8277 bp	68.47	4.60	98.91
scnpilot_p_inoc_scaffold_9026 Species: Cellvibrio japonicus (50%)	2	5049 bp	66.33	4.16	80.33
scnpilot_p_inoc_scaffold_3235 Species: Oikopleura dioica (50%)	2	10230 bp	70.22	5.21	99.12
scnpilot_p_inoc_scaffold_7780 Species: Haemophilus pittmaniae (50%)	2	5614 bp	55.59	3.95	76.63
scnpilot_p_inoc_scaffold_2279 Species: Reticulomyxa filosa (50%)	2	13474 bp	69.76	5.17	93.49
scnpilot_p_inoc_scaffold_10231 Species: Emiliania huxleyi (50%)	2	4628 bp	70.44	4.73	92.05
scnpilot_p_inoc_scaffold_11567 Species: Volvox carteri (50%)	2	4226 bp	60.10	4.15	52.74
scnpilot_p_inoc_scaffold_11823 Species: Massilia sp. LC238 (50%)	2	4164 bp	65.42	4.43	74.50
scnpilot_p_inoc_scaffold_4416 Species: Lactobacillus kisonensis (50%)	2	8272 bp	74.77	4.82	92.77
scnpilot_p_inoc_scaffold_8216 Species: Boreogadus saida (50%)	2	5383 bp	67.23	4.60	77.58
scnpilot_p_inoc_scaffold_11312 Species: Reticulomyxa filosa (50%)	2	4297 bp	56.71	4.12	81.96
scnpilot_p_inoc_scaffold_6848 Species: Opitutus terrae (50%)	2	6108 bp	73.51	4.35	91.40
scnpilot_p_inoc_scaffold_6849 Species: Lactobacillus kisonensis (50%)	2	6107 bp	69.36	4.81	100.56
scnpilot_p_inoc_scaffold_9290 Species: Dictyostelium discoideum (50%)	2	4940 bp	65.63	4.22	97.71
scnpilot_p_inoc_scaffold_11058	2	4369 bp	56.47	3.98	88.10
scnpilot_p_inoc_scaffold_11827 Species: Tetrapisispora blattae (50%)	2	4164 bp	71.25	4.47	89.48
scnpilot_p_inoc_scaffold_7020 Species: Dictyostelium discoideum (50%)	2	6008 bp	68.76	4.62	84.44
scnpilot_p_inoc_scaffold_5724 Species: Eimeria brunetti (100%)	2	6934 bp	62.23	3.83	69.22
scnpilot_p_inoc_scaffold_12358 Species: Phytophthora ramorum (50%)	2	4033 bp	61.94	4.65	84.65
scnpilot_p_inoc_scaffold_12103 Species: Capsaspora owczarzaki (100%)	2	4099 bp	64.45	4.98	78.68
scnpilot_p_inoc_scaffold_11063 Species: Streptococcus mitis (50%)	2	4367 bp	52.16	3.30	99.06
scnpilot_p_inoc_scaffold_6599 Species: Lactobacillus oris (50%)	2	6264 bp	53.22	4.26	100.53
scnpilot_p_inoc_scaffold_8992 Species: Opitutus terrae (50%)	2	5062 bp	65.94	4.36	97.31
scnpilot_p_inoc_scaffold_4169 Species: Methylobacterium nodulans (50%)	2	9892 bp	71.29	4.31	98.14
scnpilot_p_inoc_scaffold_4937 Species: Eimeria praecox (50%)	2	7667 bp	73.42	4.50	93.40
scnpilot_p_inoc_scaffold_3505	2	9664 bp	53.05	3.83	98.44
scnpilot_p_inoc_scaffold_9809 Species: Capsaspora owczarzaki (50%)	2	4767 bp	62.51	3.90	72.06
scnpilot_p_inoc_scaffold_4170 Species: Streptococcus sanguinis (50%)	2	8548 bp	72.92	5.40	97.53
scnpilot_p_inoc_scaffold_8994 Species: Trypanosoma cruzi (50%)	2	5061 bp	63.86	4.86	75.52
scnpilot_p_inoc_scaffold_10755 Species: Onchocerca volvulus (50%)	2	4453 bp	64.25	6.20	78.76
scnpilot_p_inoc_scaffold_6603 Species: Entamoeba invadens (50%)	2	7210 bp	65.31	5.28	97.95
scnpilot_p_inoc_scaffold_7027 Species: Opitutus terrae (50%)	2	6006 bp	61.24	4.95	95.95
scnpilot_p_inoc_scaffold_8484 Species: Salpingoeca rosetta (50%)	2	5259 bp	60.05	4.34	99.71
scnpilot_p_inoc_scaffold_7028 Species: Dendroctonus ponderosae (50%)	2	7715 bp	60.56	3.73	65.60
scnpilot_p_inoc_scaffold_18533 Species: Nannochloropsis gaditana (50%)	2	4599 bp	70.34	5.58	96.35
scnpilot_p_inoc_scaffold_9045 Species: Millerozyma farinosa (50%)	2	5041 bp	62.67	5.03	58.62
scnpilot_p_inoc_scaffold_9046 Species: Eimeria necatrix (50%)	2	5040 bp	67.24	4.58	80.00
scnpilot_p_inoc_scaffold_9302 Species: Albugo candida (50%)	2	4934 bp	53.10	3.65	43.47
scnpilot_p_inoc_scaffold_6094 Species: Streptococcus mitis (50%)	2	6625 bp	56.94	4.60	84.59
scnpilot_p_inoc_scaffold_6862 Species: Trypanosoma cruzi (50%)	2	6099 bp	61.67	4.11	73.29
scnpilot_p_inoc_scaffold_2809 Species: Chaetomium thermophilum (50%)	2	11359 bp	71.95	4.30	92.23
scnpilot_p_inoc_scaffold_10251	2	4622 bp	55.63	2.86	100.87
scnpilot_p_inoc_scaffold_7291 Species: Piriformospora indica (50%)	2	5857 bp	61.35	3.74	80.52
scnpilot_p_inoc_scaffold_8493 Species: Astyanax mexicanus (50%)	2	8240 bp	71.92	4.93	87.38
scnpilot_p_inoc_scaffold_8750 Species: Lactobacillus kisonensis (50%)	2	5154 bp	71.07	4.86	84.92
scnpilot_p_inoc_scaffold_11078 Species: Arctogadus glacialis (50%)	2	4362 bp	66.35	3.44	77.44

Displaying items 351-400 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (scnpilot_dereplicated_Eukaryote_unknown_16) and add all its contigs / scaffolds to the organism you choose below

----- OR --------

Other organism

scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

Terms of Service

Search Help