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scnpilot_p_inoc_scaffold_1930_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1930_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..309
-----------------
DNA (309bp)
protein (103aa)
universal stress protein UspA n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B6DD9
Universal stress protein UspA and related nucleotide-binding proteins {ECO:0000313|EMBL:GAD24032.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
UspA domain-containing protein
scnpilot_p_inoc_scaffold_1930_curated_2
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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418..1785
-----------------
DNA (1368bp)
protein (456aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030D087B
Outer membrane efflux protein {ECO:0000313|EMBL:KFC63480.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
copper resistance-related lipoprotein
scnpilot_p_inoc_scaffold_1930_curated_3
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1790..3154
-----------------
DNA (1365bp)
protein (455aa)
copper oxidase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034C8AF2
Multicopper oxidase {ECO:0000313|EMBL:EIJ46803.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
Putative multicopper oxidase
scnpilot_p_inoc_scaffold_1930_curated_4
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3167..3520
-----------------
DNA (354bp)
protein (118aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DMJ7_9BURK
Cation efflux system protein CusF {ECO:0000313|EMBL:EWS62071.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1930_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3545..5149)
-----------------
DNA (1605bp)
protein (535aa)
ABC transporter related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTD5_ALIDB
ABC transporter; K13896 microcin C transport system ATP-binding protein
ABC transporter {ECO:0000313|EMBL:GAO22858.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1930_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5146..6189)
-----------------
DNA (1044bp)
protein (348aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTD6_ALIDB
binding-protein-dependent transport systems inner membrane component; K13895 microcin C transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADV00410.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1930_curated_7
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6182..6610)
-----------------
DNA (429bp)
protein (143aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI000378B17D
PilT protein domain protein
scnpilot_p_inoc_scaffold_1930_curated_8
unknown

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comp(6607..6930)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1930_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6994..8028)
-----------------
DNA (1035bp)
protein (345aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0Y0_9BURK
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFU46672.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1930_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8093..9907)
-----------------
DNA (1815bp)
protein (605aa)
Extracellular solute-binding protein family 5 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTD9_ALIDB
ABC transporter substrate-binding protein; K13893 microcin C transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO22854.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1930_curated_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9937..10737
-----------------
DNA (801bp)
protein (267aa)
short-chain dehydrogenase/reductase SDR; K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
Enoyl-[acyl-carrier-protein] reductase [NADH] n=3 Tax=Comamonas testosteroni RepID=D0J640_COMT2
scnpilot_p_inoc_scaffold_1930_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10748..11725)
-----------------
DNA (978bp)
protein (326aa)
CheW protein id=12551066 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
CheW protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1930_curated_13
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11772..13133)
-----------------
DNA (1362bp)
protein (454aa)
Uncharacterized protein id=1265361 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative flavoprotein
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_1930_curated_14
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13130..14338)
-----------------
DNA (1209bp)
protein (403aa)
ATPase-like protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N941_9BURK
ATPase-like protein
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_1930_curated_15
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14493..15560)
-----------------
DNA (1068bp)
protein (356aa)
Uncharacterized protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7JEQ6_BURCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFQ49451.1}; TaxID=1009846 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia GG4.;"
Displaying 15 items

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