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scnpilot_p_inoc_scaffold_1158_curated

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1158_curated_1
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


70..435
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=4 Tax=Delftia RepID=RL18_DELAS
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_p_inoc_scaffold_1158_curated_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


451..969
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=2 Tax=Acidovorax RepID=RS5_ACIET rbh
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1158_curated_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


982..1164
DNA (183bp) protein (61aa)
50S ribosomal protein L30 id=1270863 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_p_inoc_scaffold_1158_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1175..1606
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=2 Tax=Alicycliphilus denitrificans RepID=E8TUF8_ALIDB
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1158_curated_5
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1631..2950
DNA (1320bp) protein (440aa)
Protein translocase subunit SecY n=4 Tax=Delftia RepID=A9BRX1_DELAS
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
scnpilot_p_inoc_scaffold_1158_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3083..3196
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=11 Tax=Comamonadaceae RepID=RL36_ACIET
ribosomal protein l36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1158_curated_7
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3221..3586
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=2 Tax=Acidovorax RepID=RS13_ACIAC
30S ribosomal protein S13-like
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3604..4008
DNA (405bp) protein (135aa)
30S ribosomal protein S11 n=4 Tax=Comamonas testosteroni RepID=D0IV19_COMT2
30S ribosomal protein S11-like
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=563045 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni S44.;"
scnpilot_p_inoc_scaffold_1158_curated_9
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4098..4721
DNA (624bp) protein (208aa)
30S ribosomal protein S4 n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0002E105FC
30S ribosomal protein S4-like
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
scnpilot_p_inoc_scaffold_1158_curated_10
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4822..5820
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
DNA-directed RNA polymerase subunit alpha n=4 Tax=Delftia RepID=RPOA_DELAS rbh
DNA-directed RNA polymerase subunit alpha-like
scnpilot_p_inoc_scaffold_1158_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5910..6308
DNA (399bp) protein (133aa)
ribosomal protein l17; K02879 large subunit ribosomal protein L17 id=12550913 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ribosomal protein l17; K02879 large subunit ribosomal protein L17
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1158_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7017..9095)
DNA (2079bp) protein (693aa)
arsA; arsenical pump-driving ATPase ArsA (EC:3.6.3.16)
Arsenical pump-driving ATPase ArsA n=1 Tax=Variovorax paradoxus B4 RepID=T1XM42_VARPD
Arsenical pump-driving ATPase ArsA {ECO:0000313|EMBL:GAO25323.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1158_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9239..9433
DNA (195bp) protein (65aa)
Putative transcriptional regulator, ArsR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T840_ACIDE
ArsR family transcriptional regulator {ECO:0000313|EMBL:GAO27096.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
arsR family transcriptional regulator
scnpilot_p_inoc_scaffold_1158_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9448..10014
DNA (567bp) protein (189aa)
Protein-tyrosine phosphatase, low molecular weight n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T839_ACIDE
Glyoxalase/bleomycin resistance protein {ECO:0000313|EMBL:GAO25321.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_1158_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10018..10521
DNA (504bp) protein (168aa)
UPI0003A410E9 related cluster n=1 Tax=unknown RepID=UPI0003A410E9
Protein tyrosine phosphatase {ECO:0000313|EMBL:GAO21142.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
protein tyrosine phosphatase
scnpilot_p_inoc_scaffold_1158_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10502..11596
DNA (1095bp) protein (365aa)
Arsenical-resistance protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T838_ACIDE
ACR3 family arsenite transporter {ECO:0000313|EMBL:GAO25319.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
arsenical-resistance protein
scnpilot_p_inoc_scaffold_1158_curated_17
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..12616
DNA (300bp) protein (100aa)
XRE family transcriptional regulator id=12551647 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
PbsX family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1158_curated_18
unknown

Not on your lists

comp(12613..12795)
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1158_curated_19

Not on your lists

13365..13676
DNA (312bp) protein (104aa)
Helix-turn-helix protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2EK05_9BACT
Helix-turn-helix protein {ECO:0000313|EMBL:EKD98829.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
helix-turn-helix domain-containing protein
scnpilot_p_inoc_scaffold_1158_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13734..14276)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BSY9_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX34349.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_p_inoc_scaffold_1158_curated_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15183..15584
DNA (402bp) protein (134aa)
cell filamentation protein Fic n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348A260
Putative uncharacterized protein {ECO:0000313|EMBL:EHR69312.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
filamentation induced by cAMP protein fic
scnpilot_p_inoc_scaffold_1158_curated_22
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15851..16528
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGI3_METPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM94672.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
scnpilot_p_inoc_scaffold_1158_curated_23
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16559..17296
DNA (738bp) protein (246aa)
Transposase, IS4 family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120T2_POLSJ
IS4 family transposase
Transposase, IS4 family {ECO:0000313|EMBL:ABE46960.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_p_inoc_scaffold_1158_curated_24
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17585..18721)
DNA (1137bp) protein (379aa)
Peptidase C14 caspase catalytic subunit p20 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB89_ACIAP
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ADX44951.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_25
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18726..21194)
DNA (2469bp) protein (823aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB90_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44952.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_26
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21194..22030)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB91_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44953.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_27
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22023..22991)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB92_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44954.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_28
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22988..24277)
DNA (1290bp) protein (430aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QB93_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44955.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1158_curated_29
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24910..25134)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTX0_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24186.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
scnpilot_p_inoc_scaffold_1158_curated_30
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25261..25506
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTW9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAO25262.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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