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scnpilot_p_inoc_scaffold_2341_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2341_curated_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..428
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TC72_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER57925.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
ABC transporter permease; K02004 putative ABC transport system permease protein
scnpilot_p_inoc_scaffold_2341_curated_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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441..1157
DNA (717bp) protein (239aa)
ABC transporter ATPase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ58_THIDA
ABC transporter ATPase; K02003 putative ABC transport system ATP-binding protein
ABC transporter ATPase {ECO:0000313|EMBL:AAZ97312.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_scaffold_2341_curated_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1180..2652
DNA (1473bp) protein (491aa)
RND efflux system outer membrane lipoprotein NodT n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJ61_THIDA
RND efflux system outer membrane lipoprotein NodT
RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:AAZ97309.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_p_inoc_scaffold_2341_curated_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2969..4354)
DNA (1386bp) protein (462aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD61_ACISJ
integral membrane sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_2341_curated_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4351..5022)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WD62_ACISJ
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABM44187.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_2341_curated_6
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5023..5361)
DNA (339bp) protein (113aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIC1_ACIET
propeptide pepsy amd peptidase m4
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:ACM34859.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2341_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5491..5772
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21106.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2341_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5814..7193
DNA (1380bp) protein (460aa)
Ferric reductase domain protein transmembrane component domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYM1_ALIDB
uncharacterized LOC100493793
Ferric reductase domain protein transmembrane component domain protein {ECO:0000313|EMBL:ADV02030.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2341_curated_9
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7288..8079
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BST5_9BURK
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EHL24576.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
alpha/beta hydrolase
scnpilot_p_inoc_scaffold_2341_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8162..8518)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MH64_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34692.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2341_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8586..9797
DNA (1212bp) protein (404aa)
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Glutamyl-gamma-semialdehyde dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GSA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00412};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp.
Gamma-glutamyl phosphate reductase n=1 Tax=Acidovorax sp. (strain JS42) RepID=PROA_ACISJ rbh
gamma-glutamyl phosphate reductase-like
scnpilot_p_inoc_scaffold_2341_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9858..11333
DNA (1476bp) protein (492aa)
TrkA-N domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW33_ALIDB
trka-n domain protein; K03499 trk system potassium uptake protein TrkA
TrkA-N domain protein {ECO:0000313|EMBL:ADV01807.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2341_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11350..12816
DNA (1467bp) protein (489aa)
Trk system potassium uptake protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TW32_ALIDB
cation transporter; K03498 trk system potassium uptake protein TrkH
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2341_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12920..14212
DNA (1293bp) protein (431aa)
glutamate/cysteine ligase; K01919 glutamate--cysteine ligase [EC:6.3.2.2]
Glutamate/cysteine ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G999_ALIDK
Glutamate/cysteine ligase {ECO:0000313|EMBL:AEB86758.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_2341_curated_15
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14371..16239
DNA (1869bp) protein (623aa)
Probable potassium transport system protein kup n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q996_ACIAP
probable potassium transport system protein kup-like
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_2341_curated_16
unknown

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comp(16074..16412)
DNA (339bp) protein (113aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2341_curated_17
unknown

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comp(16474..17307)
DNA (834bp) protein (278aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2341_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17439..18923)
DNA (1485bp) protein (495aa)
3-octaprenyl-4hydroxybenzoate decarboxylase (EC:4.1.1.-); K03182 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]
3-polyprenyl-4-hydroxybenzoate decarboxylase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003778D9F
3-octaprenyl-4hydroxybenzoate decarboxylase {ECO:0000313|EMBL:GAD24317.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2341_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18979..19566)
DNA (588bp) protein (196aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364B76E
scnpilot_p_inoc_scaffold_2341_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19563..19973)
DNA (411bp) protein (137aa)
zinc-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036531E9
Uncharacterized protein {ECO:0000313|EMBL:GAD24315.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2341_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19970..20488)
DNA (519bp) protein (173aa)
sterol-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D9281
Uncharacterized protein {ECO:0000313|EMBL:GAD24314.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2341_curated_22
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20501..21409)
DNA (909bp) protein (303aa)
peptidase U32; K01423 [EC:3.4.-.-]
protease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003692F1A
Protease {ECO:0000313|EMBL:GAD24313.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2341_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21406..21660)
DNA (255bp) protein (85aa)
peptidase U32; K08303 putative protease [EC:3.4.-.-]
protease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D9EF4
Peptidase U32 {ECO:0000313|EMBL:GAD24312.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Displaying 23 items

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