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scnpilot_p_inoc_scaffold_8458_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_8458_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..395)
DNA (393bp) protein (131aa)
UPI0003A42D75 related cluster n=1 Tax=unknown RepID=UPI0003A42D75
coenzyme A biosynthesis bifunctional protein coaBC-like
Phosphopantothenoylcysteine synthetase/decarboxylase {ECO:0000313|EMBL:GAD20777.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_8458_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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500..2149
DNA (1650bp) protein (550aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
CTP synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D66CD
CTP synthase-like
scnpilot_p_inoc_scaffold_8458_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2153..3010
DNA (858bp) protein (286aa)
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
2-dehydro-3-deoxyphosphooctonate aldolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U253_ALIDB
scnpilot_p_inoc_scaffold_8458_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3105..4391
DNA (1287bp) protein (429aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Enolase n=2 Tax=Alicycliphilus denitrificans RepID=E8U251_ALIDB
scnpilot_p_inoc_scaffold_8458_curated_5
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4412..4702
DNA (291bp) protein (97aa)
Cell division protein FtsB n=2 Tax=Acidovorax RepID=A1W4R0_ACISJ
cell division protein FtsB; K05589 cell division protein FtsB
Cell division protein FtsB {ECO:0000256|HAMAP-Rule:MF_00599, ECO:0000256|SAAS:SAAS00014481}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_8458_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4776..6506)
DNA (1731bp) protein (577aa)
UPI0003AA51D4 related cluster n=1 Tax=unknown RepID=UPI0003AA51D4
Acetyl/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:GAD23818.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
acetyl-/propionyl-coenzyme A carboxylase alpha chain-like
scnpilot_p_inoc_scaffold_8458_curated_7
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6503..8287)
DNA (1785bp) protein (595aa)
Uncharacterized protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RUJ6_9BURK
Acetyl-COA carboxylase {ECO:0000313|EMBL:KJA09559.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_8458_curated_8
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8292..9044)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000377472E
UPF0271 protein AX13_07890 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
lamb/ycsf family protein; K07160 UPF0271 protein
scnpilot_p_inoc_scaffold_8458_curated_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9100..9867)
DNA (768bp) protein (256aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase n=3 Tax=Enterobacteriaceae RepID=K8CI68_CROSK
scnpilot_p_inoc_scaffold_8458_curated_10
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9864..10076)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FB8E40
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE35676.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
scnpilot_p_inoc_scaffold_8458_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10232..11011)
DNA (780bp) protein (260aa)
sulfate-transporting ATPase (EC:3.6.3.25); K10025 arginine/ornithine transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U249_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADU98853.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_8458_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11023..11736)
DNA (714bp) protein (238aa)
Polar amino acid ABC transporter, inner membrane subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U248_ALIDB
polar amino acid abc transporter, inner membrane subunit; K10023 arginine/ornithine transport system permease protein
Polar amino acid ABC transporter permease {ECO:0000313|EMBL:GAO26953.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_8458_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11733..12422)
DNA (690bp) protein (230aa)
Polar amino acid ABC transporter, inner membrane subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U247_ALIDB
polar amino acid ABC transporter permease; K10024 arginine/ornithine transport system permease protein
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEB86125.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_8458_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12448..13209)
DNA (762bp) protein (254aa)
Extracellular solute-binding protein family 3 n=2 Tax=Alicycliphilus denitrificans RepID=E8U246_ALIDB
histidine-binding periplasmic protein-like
ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO26951.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_8458_curated_15
Pseudomonas sp. C5pp, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13399..13950
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI00037170C4
RNA polymerase sigma 70 {ECO:0000313|EMBL:KIC83407.1}; TaxID=1586081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. C5pp.;"
RNA polymerase ECF-subfamily sigma-70 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_8458_curated_16
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13947..14840
DNA (894bp) protein (298aa)
Transmembrane sensor n=2 Tax=Pseudomonas aeruginosa RepID=U8KD63_PSEAI
Iron siderophore sensor protein {ECO:0000313|EMBL:BAR68876.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
putative transmembrane sensor
scnpilot_p_inoc_scaffold_8458_curated_17
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15032..15496
DNA (465bp) protein (155aa)
TonB-dependent outermembrane ferripyoverdine receptor FpvA n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YPK0_9RHOO
TonB-dependent outermembrane ferripyoverdine receptor FpvA {ECO:0000313|EMBL:ENO84317.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
Displaying 17 items

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