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scnpilot_p_inoc_scaffold_1100_curated

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1100_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..901)
DNA (900bp) protein (300aa)
acyl-CoA dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037EA2E9
Glutaryl-CoA dehydrogenase {ECO:0000313|EMBL:GAD20894.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
glutaryl-CoA dehydrogenase, mitochondrial-like
scnpilot_p_inoc_scaffold_1100_curated_2
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(942..1295)
DNA (354bp) protein (118aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCD9_ACIET
glutaryl-CoA dehydrogenase, mitochondrial-like
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACM33844.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1100_curated_3
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1336..2496)
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase domain-containing protein; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4M1_LEPCP
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACB33460.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
scnpilot_p_inoc_scaffold_1100_curated_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2514..3296)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase/isomerase; K07536 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-] id=12553225 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
2-ketocyclohexanecarboxyl-CoA hydrolase (EC:4.1.3.36); K07536 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-]
scnpilot_p_inoc_scaffold_1100_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3331..4149)
DNA (819bp) protein (273aa)
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-] id=12553224 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1100_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4408..5802)
DNA (1395bp) protein (465aa)
peptidase u32; K08303 putative protease [EC:3.4.-.-]
protease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D2EBF
Peptidase U32 {ECO:0000313|EMBL:GAD21375.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1100_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5887..6774)
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003702516
Transcriptional regulator {ECO:0000313|EMBL:GAD21374.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1100_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6889..7632
DNA (744bp) protein (248aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365ABB5
Predicted permeases {ECO:0000313|EMBL:GAD21373.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K07090
scnpilot_p_inoc_scaffold_1100_curated_9
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7909..8541
DNA (633bp) protein (211aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUN9_DELSC
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEF87977.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_p_inoc_scaffold_1100_curated_10
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8538..9563
DNA (1026bp) protein (342aa)
Anti-FecI sigma factor, FecR n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AUP0_DELSC
anti-FecI sigma factor FecR; K07165 transmembrane sensor
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEF87978.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_p_inoc_scaffold_1100_curated_11
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9855..12410
DNA (2556bp) protein (852aa)
TonB-dependent receptor n=1 Tax=Comamonas sp. B-9 RepID=UPI00039588D6
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ADX45696.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1100_curated_12
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12682..12975
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TB6_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD85896.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_1100_curated_13
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12983..14599
DNA (1617bp) protein (539aa)
Putative transmembrane protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TB7_NITEU
transmembrane protein rbh
Putative transmembrane protein {ECO:0000313|EMBL:CAD85895.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_1100_curated_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14605..15156)
DNA (552bp) protein (184aa)
chemotaxis protein CheY n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000382E554
Two component Fis family transcriptional regulator {ECO:0000313|EMBL:GAD21372.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
two component Fis family transcriptional regulator; K15012 two-component system, response regulator RegA
scnpilot_p_inoc_scaffold_1100_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15242..16573)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
histidine kinase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003778A1D
scnpilot_p_inoc_scaffold_1100_curated_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16557..17360)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F3B12
Uncharacterized protein {ECO:0000313|EMBL:GAD21370.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Surfeit locus 1 family protein; K14998 surfeit locus 1 family protein
scnpilot_p_inoc_scaffold_1100_curated_17
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17360..17782)
DNA (423bp) protein (141aa)
cytochrome C oxidase subunit III n=1 Tax=Acidovorax radicis RepID=UPI0002375BA5
cytochrome o ubiquinol oxidase subunit IV
Cytochrome o ubiquinol oxidase subunit IV {ECO:0000313|EMBL:AFU47067.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1100_curated_18
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17783..18394)
DNA (612bp) protein (204aa)
Cytochrome o ubiquinol oxidase, subunit III n=1 Tax=Acidovorax sp. CF316 RepID=J0UCB1_9BURK
cytochrome o ubiquinol oxidase subunit 3-like
Cytochrome o ubiquinol oxidase, subunit III {ECO:0000313|EMBL:EJE53807.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
scnpilot_p_inoc_scaffold_1100_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18387..20396)
DNA (2010bp) protein (670aa)
cytochrome o ubiquinol oxidase, subunit i (EC:1.9.3.1); K02298 cytochrome o ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome o ubiquinol oxidase, subunit I n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ28_ALIDB
Cytochrome o ubiquinol oxidase subunit I {ECO:0000313|EMBL:GAD21367.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1100_curated_20
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20389..21402)
DNA (1014bp) protein (338aa)
ubiquinol oxidase subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
Ubiquinol oxidase subunit 2 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YAW0_9BURK
Cytochrome O ubiquinol oxidase {ECO:0000313|EMBL:KJA11923.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_p_inoc_scaffold_1100_curated_21
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21661..23004
DNA (1344bp) protein (448aa)
General substrate transporter n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GAH9_ALIDK
Arabinose ABC transporter permease {ECO:0000313|EMBL:KJA11924.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
general substrate transporter
scnpilot_p_inoc_scaffold_1100_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23110..24075)
DNA (966bp) protein (322aa)
Protein TolA n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TZ31_ALIDB
protein tola; K03646 colicin import membrane protein
Protein TolA {ECO:0000313|EMBL:ADU99740.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1100_curated_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24101..24529)
DNA (429bp) protein (143aa)
biopolymer transport protein ExbD/TolR id=12551109 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1100_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24543..25244)
DNA (702bp) protein (234aa)
Protein TolQ n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TBE3_ACIDE
Protein TolQ {ECO:0000313|EMBL:EER58205.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
protein tolq; K03562 biopolymer transport protein TolQ
scnpilot_p_inoc_scaffold_1100_curated_25
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25241..25657)
DNA (417bp) protein (139aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I777_9BURK
tol-pal system-associated acyl-CoA thioesterase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1100_curated_26
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25674..26858)
DNA (1185bp) protein (395aa)
Aminotransferase class I and II n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBL8_ACIET
aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ACM33697.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1100_curated_27
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26876..27424)
DNA (549bp) protein (183aa)
N utilization substance protein B homolog n=1 Tax=Acidovorax sp. NO-1 RepID=H0C187_9BURK
transcription antitermination factor nusb; K03625 N utilization substance protein B
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
scnpilot_p_inoc_scaffold_1100_curated_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27421..27891)
DNA (471bp) protein (157aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] id=12551104 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1100_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27898..29019)
DNA (1122bp) protein (374aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZ38_ALIDB
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000313|EMBL:AEB84626.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1100_curated_30
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29360..29653)
DNA (294bp) protein (98aa)
Ferredoxin n=1 Tax=Acidovorax sp. NO-1 RepID=H0C184_9BURK
Ferredoxin {ECO:0000313|EMBL:EHL21739.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
ferredoxin
Displaying items 1-30 of 33 in total

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