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scnpilot_p_inoc_scaffold_5622_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_5622_curated_1
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..516
DNA (516bp) protein (172aa)
Elongation factor Tu n=3 Tax=Comamonadaceae RepID=EFTU_ACIAC rbh
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_5622_curated_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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695..1078
DNA (384bp) protein (128aa)
preprotein translocase subunit SecE n=1 Tax=Acidovorax radicis RepID=UPI000237800D
secE; preprotein translocase subunit SecE
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_5622_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1078..1674
DNA (597bp) protein (199aa)
Transcription termination/antitermination protein NusG n=2 Tax=Alicycliphilus denitrificans RepID=E8TVM0_ALIDB
transcription termination/antitermination factor nusg; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_5622_curated_4
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1810..2241
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=2 Tax=Acidovorax RepID=RL11_ACIET
rplK; 50S ribosomal protein l11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_5622_curated_5
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2243..2938
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=2 Tax=Acidovorax RepID=RL1_ACIET rbh
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_5622_curated_6
unknown

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3065..3160
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_5622_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3172..3678
DNA (507bp) protein (169aa)
UPI0003A6A1D2 related cluster n=1 Tax=unknown RepID=UPI0003A6A1D2
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
scnpilot_p_inoc_scaffold_5622_curated_8
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3728..4105
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C456_9BURK
rplL; 50S ribosomal protein L7/L12
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_5622_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4394..8518
DNA (4125bp) protein (1375aa)
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q8L7_ACIAP
scnpilot_p_inoc_scaffold_5622_curated_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8649..8906
DNA (258bp) protein (86aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AN21_DELSC
Displaying 10 items

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