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scnpilot_p_inoc_scaffold_1232_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1232_curated_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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106..1350
DNA (1245bp) protein (415aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6Q6_ACIDE
scnpilot_p_inoc_scaffold_1232_curated_2
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1364..1810
DNA (447bp) protein (149aa)
Transcriptional repressor NrdR n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QCC5_ACIAP
ribonucleotide reductase regulator NrdR-like protein; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1232_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1906..2820)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E653A
Transcriptional regulator {ECO:0000313|EMBL:GAD21588.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1232_curated_4
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2831..3244)
DNA (414bp) protein (138aa)
PIN domain protein, putative n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WEB2_VEREI
PilT domain-containing protein
PIN domain protein, putative {ECO:0000313|EMBL:ABM55969.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_p_inoc_scaffold_1232_curated_5
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3241..3495)
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WEB1_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM55968.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_p_inoc_scaffold_1232_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3647..4087
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369072F
Uncharacterized protein {ECO:0000313|EMBL:GAD21587.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1232_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4199..5251
DNA (1053bp) protein (351aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000382E910
Hydrolases of the alpha/beta superfamily {ECO:0000313|EMBL:GAD21586.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K06889 rbh
scnpilot_p_inoc_scaffold_1232_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5248..6420
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000361C74C
Arabinose efflux permease {ECO:0000313|EMBL:GAD21585.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Putative transcriptional regulator
scnpilot_p_inoc_scaffold_1232_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6447..8219)
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000367EAC3
5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases {ECO:0000313|EMBL:GAD21335.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
5'-nucleotidase domain-containing protein
scnpilot_p_inoc_scaffold_1232_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8216..9313)
DNA (1098bp) protein (366aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=12551662 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1232_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9400..9858)
DNA (459bp) protein (153aa)
CBS domain containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY83_ALIDB
uncharacterized protein At5g10860, mitochondrial-like
CBS domain containing protein {ECO:0000313|EMBL:ADU99669.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1232_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9913..11304
DNA (1392bp) protein (464aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase (EC:2.5.1.47); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine aminocarboxypropyltransferase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E1856
O-acetylhomoserine lyase {ECO:0000313|EMBL:GAO23677.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1232_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11301..12116
DNA (816bp) protein (272aa)
Alpha/beta hydrolase fold protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TY81_ALIDB
alpha/beta hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:AEB84495.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1232_curated_14
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12176..13438)
DNA (1263bp) protein (421aa)
UPF0761 membrane protein AcdelDRAFT_2300 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5X0_ACIDE
ribonuclease BN
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1232_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13460..13840
DNA (381bp) protein (127aa)
membrane protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003627854
Predicted membrane protein {ECO:0000313|EMBL:GAD24826.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1232_curated_16
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13994..15415
DNA (1422bp) protein (474aa)
FAD linked oxidase domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5W8_ACIDE
FAD linked oxidase domain protein {ECO:0000313|EMBL:EER60134.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
FAD linked oxidase domain-containing protein
scnpilot_p_inoc_scaffold_1232_curated_17
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15419..17047)
DNA (1629bp) protein (543aa)
Putative transmembrane protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TB7_NITEU
transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:CAD85895.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_1232_curated_18
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17044..17340)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TB6_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD85896.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_1232_curated_19
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17342..17599)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TB5_NITEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAD85897.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_1232_curated_20
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17662..20118)
DNA (2457bp) protein (819aa)
TonB-dependent siderophore receptor family protein 21 n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F200_9BURK
TonB-dependent siderophore receptor family protein 21 {ECO:0000313|EMBL:EHK67657.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
TonB-dependent siderophore receptor family protein 21; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_1232_curated_21
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20317..21336)
DNA (1020bp) protein (340aa)
regulatory protein n=1 Tax=Acidovorax radicis RepID=UPI0002375116
transmembrane sensor
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_1232_curated_22
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21333..21851)
DNA (519bp) protein (173aa)
RNA polymerase sigma factor n=1 Tax=Acidovorax radicis RepID=UPI0002375115
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1232_curated_23
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21991..22806
DNA (816bp) protein (272aa)
thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
Thymidylate synthase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q309_ACIAP
scnpilot_p_inoc_scaffold_1232_curated_24
unknown

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22811..23839
DNA (1029bp) protein (343aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1232_curated_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23863..24351
DNA (489bp) protein (163aa)
dihydrofolate reductase (EC:1.5.1.3); K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GEP3_ALIDK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 25 items

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