ggKbase home page

scnpilot_p_inoc_scaffold_905_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_905_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..2832)
DNA (2832bp) protein (944aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUC5_ALIDB
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ADV00530.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
heavy metal efflux pump, czca family; K07239 heavy-metal exporter, HME family
scnpilot_p_inoc_scaffold_905_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2843..3955)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUC6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00531.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_905_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3952..4533)
DNA (582bp) protein (194aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUC7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84049.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_905_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4638..5948)
DNA (1311bp) protein (437aa)
Outer membrane efflux protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUC8_ALIDB
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
Outer membrane efflux protein {ECO:0000313|EMBL:AEB84048.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_905_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6075..6425)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUC9_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84047.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_905_curated_6
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6488..6796)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002377F9A
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_905_curated_7
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6998..8998
DNA (2001bp) protein (667aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI00037D47C2
TonB-dependent transporter {ECO:0000313|EMBL:BAE87073.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
TonB-dependent outer-membrane transporter; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_905_curated_8
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9143..10417
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003729969
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF12233.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scnpilot_p_inoc_scaffold_905_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10490..11563
DNA (1074bp) protein (358aa)
Hemin-degrading family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS4_VARPE
uncharacterized LOC100489445
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31798.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
scnpilot_p_inoc_scaffold_905_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11581..12477
DNA (897bp) protein (299aa)
Periplasmic binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS6_VARPE
Variovorax paradoxus strain MEDvA23 contig_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31796.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
scnpilot_p_inoc_scaffold_905_curated_11
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..13598
DNA (1125bp) protein (375aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Acidovorax sp. CF316 RepID=J0KG41_9BURK
uncharacterized LOC100489445
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:EJE52625.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
scnpilot_p_inoc_scaffold_905_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13595..14392
DNA (798bp) protein (266aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VAS8_VARPE
ABC transporter related protein {ECO:0000313|EMBL:ADU36282.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_p_inoc_scaffold_905_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14469..15344)
DNA (876bp) protein (292aa)
polyphosphate:nucleotide phosphotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E4307
Uncharacterized protein {ECO:0000313|EMBL:GAD20576.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
polyphosphate:nucleotide phosphotransferase
scnpilot_p_inoc_scaffold_905_curated_14
Pseudomonas plecoglossicida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16018..17160
DNA (1143bp) protein (381aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=70775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas plecoglossicida.;"
Histidine kinase n=3 Tax=Pseudomonas RepID=F8FRV9_PSEPU
histidine kinase
scnpilot_p_inoc_scaffold_905_curated_15
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17145..18494
DNA (1350bp) protein (450aa)
Two component sigma54 specific Fis family transcriptional regulator n=1 Tax=Pseudomonas putida S16 RepID=F8FRV8_PSEPU
two component sigma54 specific Fis family transcriptional regulator
Two component sigma54 specific Fis family transcriptional regulator {ECO:0000313|EMBL:AEJ11235.1}; TaxID=1042876 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain S16).;"
scnpilot_p_inoc_scaffold_905_curated_16
Pseudomonas sp. P482, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18663..19349
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Pseudomonas sp. HYS RepID=UPI00029A36D5
Uncharacterized protein {ECO:0000313|EMBL:KDN98734.1}; TaxID=1460691 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. P482.;"
putative secreted protein
scnpilot_p_inoc_scaffold_905_curated_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19433..19780
DNA (348bp) protein (116aa)
Uncharacterized protein n=2 Tax=Delftia RepID=A9BTD0_DELAS
hypothetical protein; K09922 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFJ10054.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_p_inoc_scaffold_905_curated_18
Pseudomonas sp. C5pp, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19790..21127
DNA (1338bp) protein (446aa)
Major facilitator transporter n=2 Tax=Pseudomonas putida RepID=F8FRV6_PSEPU
Major facilitator transporter {ECO:0000313|EMBL:KIC80913.1}; TaxID=1586081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. C5pp.;"
major facilitator transporter
scnpilot_p_inoc_scaffold_905_curated_19
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21115..22029)
DNA (915bp) protein (305aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HLX8_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:KJA11071.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_905_curated_20
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22103..22588
DNA (486bp) protein (162aa)
Transmembrane pair domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BUE5_9BURK
transmembrane pair domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_905_curated_21
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22702..23418
DNA (717bp) protein (239aa)
Methionine aminopeptidase {ECO:0000313|EMBL:ETY81195.1}; EC=3.4.11.18 {ECO:0000313|EMBL:ETY81195.1};; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002D59B25
hypothetical protein
scnpilot_p_inoc_scaffold_905_curated_22
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23467..23865)
DNA (399bp) protein (133aa)
Putative death-on-curing protein Doc n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CNN0_THIA3
Putative death-on-curing protein Doc
Putative death-on-curing protein Doc {ECO:0000313|EMBL:CAZ90158.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
scnpilot_p_inoc_scaffold_905_curated_23
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23862..24086)
DNA (225bp) protein (75aa)
Addiction module antidote n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XWH7_LEPCP
addiction module antidote
Addiction module antidote {ECO:0000313|EMBL:ACB33845.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
scnpilot_p_inoc_scaffold_905_curated_24
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24529..27024)
DNA (2496bp) protein (832aa)
TonB-dependent siderophore receptor n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z4L5_9RHOO
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ENO87094.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_905_curated_25
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27235..28236)
DNA (1002bp) protein (334aa)
Anti-FecI sigma factor, FecR n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AZK5_DELSC
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:EZP50252.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
anti-FecI sigma factor FecR
scnpilot_p_inoc_scaffold_905_curated_26
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28233..28760)
DNA (528bp) protein (176aa)
RNA polymerase sigma factor n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IQ15_9BURK
RNA polymerase sigma factor {ECO:0000313|EMBL:KHA79612.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_905_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28975..30531)
DNA (1557bp) protein (519aa)
alkyl hydroperoxide reductase; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]
Alkyl hydroperoxide reductase, F subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUD1_ALIDB
Alkyl hydroperoxide reductase subunit F {ECO:0000313|EMBL:GAO23927.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_905_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30632..31207)
DNA (576bp) protein (192aa)
peroxiredoxin (EC:1.11.1.15); K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]
Peroxiredoxin {ECO:0000313|EMBL:AEB84044.1}; EC=1.11.1.15 {ECO:0000313|EMBL:AEB84044.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Peroxiredoxin n=2 Tax=Alicycliphilus denitrificans RepID=E8TUD2_ALIDB
scnpilot_p_inoc_scaffold_905_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31470..31949
DNA (480bp) protein (160aa)
Bacterioferritin n=2 Tax=Alicycliphilus denitrificans RepID=E8TUD3_ALIDB
bacterioferritin subunit 2-like
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_905_curated_30
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32017..33579)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003804132
MscS Mechanosensitive ion channel precursor
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ACO74926.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
Displaying items 1-30 of 48 in total

View Taxonomy