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scnpilot_p_inoc_scaffold_900_curated

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_900_curated_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81..1430
DNA (1350bp) protein (450aa)
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KJA09230.1}; EC=6.4.1.2 {ECO:0000313|EMBL:KJA09230.1};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7M2_ACIDE
acetyl-CoA carboxylase, biotin carboxylase
scnpilot_p_inoc_scaffold_900_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1507..2394
DNA (888bp) protein (296aa)
50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GF53_ALIDK
scnpilot_p_inoc_scaffold_900_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2429..3571
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000377D1C0
Uncharacterized protein {ECO:0000313|EMBL:GAD23797.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
uncharacterized LOC100498143
scnpilot_p_inoc_scaffold_900_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3599..4495
DNA (897bp) protein (299aa)
sugar kinase n=1 Tax=Acidovorax radicis RepID=UPI0002375906
uncharacterized LOC100498143
Ribokinase-like domain-containing protein {ECO:0000313|EMBL:AFU47664.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_900_curated_5
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4813..5418
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YVA0_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO86337.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
scnpilot_p_inoc_scaffold_900_curated_6
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5782..6033)
DNA (252bp) protein (84aa)
Conjugal transfer protein n=7 Tax=Gammaproteobacteria RepID=R9VDG7_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:AJO79047.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
conjugal transfer protein
scnpilot_p_inoc_scaffold_900_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6030..7289)
DNA (1260bp) protein (420aa)
Conjugation TrbI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT25_ALIDB
Conjugative transfer protein TrbI {ECO:0000313|EMBL:GAO20568.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugation trbi family protein; K03195 type IV secretion system protein VirB10
scnpilot_p_inoc_scaffold_900_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7292..8293)
DNA (1002bp) protein (334aa)
P-type conjugative transfer protein TrbG n=2 Tax=Comamonadaceae RepID=A9BTR5_DELAS
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugative transfer protein TrbG {ECO:0000313|EMBL:AIJ46186.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
scnpilot_p_inoc_scaffold_900_curated_9
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8290..8994)
DNA (705bp) protein (235aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=A9BTR6_DELAS
VirB8 family protein {ECO:0000313|EMBL:KIN88339.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_p_inoc_scaffold_900_curated_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9006..10373)
DNA (1368bp) protein (456aa)
Conjugal transfer protein TrbL n=1 Tax=Ralstonia sp. PBA RepID=I9BTE6_9RALS
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AIJ45779.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
scnpilot_p_inoc_scaffold_900_curated_11
Cupriavidus oxalaticus, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10370..10693)
DNA (324bp) protein (108aa)
putative lipoprotein id=12551710 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:CAD61155.1}; TaxID=96344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus oxalaticus.;"
putative lipoprotein
scnpilot_p_inoc_scaffold_900_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10705..11430)
DNA (726bp) protein (242aa)
Conjugal transfer protein TrbJ n=1 Tax=Ralstonia sp. PBA RepID=I9W3M6_9RALS
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:GAO20573.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbJ
scnpilot_p_inoc_scaffold_900_curated_13
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..13898)
DNA (2472bp) protein (824aa)
VirB4 family type IV secretion/conjugal transfer ATPase n=4 Tax=Pseudomonas aeruginosa RepID=N2D3B7_PSEAI
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
CagE TrbE VirB component of type IV transporter system {ECO:0000313|EMBL:ACL72979.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_p_inoc_scaffold_900_curated_14
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13911..14183)
DNA (273bp) protein (91aa)
Conjugal transfer protein TrbD n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL81_BORPD
trbD1; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
Conjugal transfer protein TrbD {ECO:0000313|EMBL:CAP42551.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_p_inoc_scaffold_900_curated_15
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14180..14563)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JKZ9_AERHY
Uncharacterized protein {ECO:0000313|EMBL:EKB27238.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
Conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
scnpilot_p_inoc_scaffold_900_curated_16
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14560..15639)
DNA (1080bp) protein (360aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Pseudomonas aeruginosa BWHPSA011 RepID=U8WJA7_PSEAI
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:ACL72976.1}; Flags: Precursor;; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
scnpilot_p_inoc_scaffold_900_curated_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15636..16100)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P5E2_PSEAI
copg domain-containing protein DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ACM34932.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_900_curated_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16097..18097)
DNA (2001bp) protein (667aa)
Type IV secretion system protein VirD4 n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WS14_DELAC
Conjugal transfer protein TraG {ECO:0000313|EMBL:AIJ46945.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugal transfer coupling protein TraG
scnpilot_p_inoc_scaffold_900_curated_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18611..19426)
DNA (816bp) protein (272aa)
Putative LysR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTF4_STRMK
putative LysR family transcriptional regulator
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:CAQ44851.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_p_inoc_scaffold_900_curated_20
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20010..21356)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MX21_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE04837.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
scnpilot_p_inoc_scaffold_900_curated_21
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21996..22808)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALE11 RepID=UPI000372C154
Uncharacterized protein {ECO:0000313|EMBL:EED34902.1}; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Luminiphilus.;" source="Luminiphilus syltensis NOR5-1B.;"
sterol desaturase
scnpilot_p_inoc_scaffold_900_curated_22
unknown

Not on your lists

comp(22818..23096)
DNA (279bp) protein (93aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_900_curated_23
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23504..24448)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI0003738B74
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL47211.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
scnpilot_p_inoc_scaffold_900_curated_24
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24459..25808)
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X0Y6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EZP48352.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
scnpilot_p_inoc_scaffold_900_curated_25
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26045..26500
DNA (456bp) protein (152aa)
histone acetyltransferase HPA2-like acetyltransferase; K03827 putative acetyltransferase [EC:2.3.1.-]
GCN5 family N-acetyltransferase n=1 Tax=Pandoraea pnomenusa 3kgm RepID=V5PUQ3_9BURK
GCN5 family acetyltransferase {ECO:0000313|EMBL:AKC70418.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativorans.;"
scnpilot_p_inoc_scaffold_900_curated_26
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26615..27832
DNA (1218bp) protein (406aa)
LuxR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377F7F
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_900_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27845..29803)
DNA (1959bp) protein (653aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FTG0_STRMK
Relaxase type IV secretory pathway VirD2 {ECO:0000313|EMBL:GAO23977.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_900_curated_28
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30240..30827)
DNA (588bp) protein (196aa)
Conjugal transfer protein TraF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL24_BORPD
traF1; conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:CAP42530.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_p_inoc_scaffold_900_curated_29
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30824..31381)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C054_9BURK
Transposase {ECO:0000313|EMBL:AIJ46931.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
hypothetical protein
scnpilot_p_inoc_scaffold_900_curated_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31378..31662)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5R2_ALIDK
ParB partition protein {ECO:0000313|EMBL:AIJ47701.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
hypothetical protein
Displaying items 1-30 of 64 in total

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