ggKbase home page

scnpilot_p_inoc_scaffold_1708_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1708_curated_1
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..201)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0TZT0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE49432.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein; K09956 hypothetical protein
scnpilot_p_inoc_scaffold_1708_curated_2
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198..1010)
DNA (813bp) protein (271aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1EAH9_9BURK
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:EJE49431.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC transporter related protein
scnpilot_p_inoc_scaffold_1708_curated_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1007..2041)
DNA (1035bp) protein (345aa)
iron-siderophore ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI000237752E
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:EJE49430.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
transport system permease; K02015 iron complex transport system permease protein
scnpilot_p_inoc_scaffold_1708_curated_4
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2038..3180)
DNA (1143bp) protein (381aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Acidovorax sp. CF316 RepID=J0KDW0_9BURK
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EJE49428.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Fe3+-hydroxamate ABC transporter periplasmic component-like protein; K02016 iron complex transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1708_curated_5
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3339..4262
DNA (924bp) protein (308aa)
AraC family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377531
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJE49427.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1708_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4432..4731
DNA (300bp) protein (100aa)
DNA polymerase beta domain protein region n=2 Tax=Chloroflexus RepID=A9WEZ6_CHLAA
DNA polymerase beta domain-containing protein; K07075
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1708_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4861..5013
DNA (153bp) protein (51aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1708_curated_8
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5310..7295
DNA (1986bp) protein (662aa)
TonB-dependent receptor n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B5A3_PARDP
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:ABL70697.1}; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
scnpilot_p_inoc_scaffold_1708_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7381..8019)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E0E5A
Metallo-beta-lactamase {ECO:0000313|EMBL:GAD24486.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
beta-lactamase domain-containing protein
scnpilot_p_inoc_scaffold_1708_curated_10
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8165..8791)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003808BBB
Uncharacterized protein {ECO:0000313|EMBL:KDP86250.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1708_curated_11
Burkholderia phenoliruptrix, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8991..10169
DNA (1179bp) protein (393aa)
Long-chain fatty acid transport protein n=1 Tax=Burkholderia phenoliruptrix BR3459a RepID=K0DMZ4_9BURK
long-chain fatty acid transport protein
Long-chain fatty acid transport protein {ECO:0000313|EMBL:AFT86255.1}; TaxID=1229205 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phenoliruptrix BR3459a.;"
scnpilot_p_inoc_scaffold_1708_curated_12
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10184..11323
DNA (1140bp) protein (380aa)
bphC; biphenyl-2,3-diol 1,2-dioxygenase (EC:1.13.11.39)
hypothetical protein n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003753ECF
Biphenyl-2,3-diol 1,2-dioxygenase {ECO:0000313|EMBL:KDP86244.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
scnpilot_p_inoc_scaffold_1708_curated_13
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11344..12300
DNA (957bp) protein (319aa)
Fumarylacetoacetate hydrolase n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GWK9_CUPNN
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:KJK23470.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
fumarylacetoacetate hydrolase
scnpilot_p_inoc_scaffold_1708_curated_14
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12297..13961
DNA (1665bp) protein (555aa)
mhpA; 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase MhpA (EC:1.14.13.127); K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
3-(3-hydroxyphenyl)propionate hydroxylase n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0002E42BDC
3-(3-hydroxyphenyl)propionate hydroxylase {ECO:0000313|EMBL:KDP86241.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
scnpilot_p_inoc_scaffold_1708_curated_15
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13951..14976
DNA (1026bp) protein (342aa)
Putative NADPH:quinone reductase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FE69_9RHIZ
zinc-binding alcohol dehydrogenase
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_p_inoc_scaffold_1708_curated_16
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15004..16905
DNA (1902bp) protein (634aa)
AMP-binding protein (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-binding domain protein n=1 Tax=Burkholderia multivorans ATCC BAA-247 RepID=J5C494_9BURK
AMP-binding enzyme family protein {ECO:0000313|EMBL:AIO30761.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
scnpilot_p_inoc_scaffold_1708_curated_17
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16958..18883)
DNA (1926bp) protein (642aa)
Glycosyl transferase family 2 n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q181_ACIAP
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADX45229.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1708_curated_18
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19010..20188)
DNA (1179bp) protein (393aa)
Collagen triple helix repeat-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q182_ACIAP
collagen triple helix repeat-containing protein
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:ADX45230.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1708_curated_19
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20314..21018)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023774A1
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1708_curated_20
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21139..21861)
DNA (723bp) protein (241aa)
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ABM57377.1}; EC=4.2.99.18 {ECO:0000313|EMBL:ABM57377.1};; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
exodeoxyribonuclease III Xth (EC:4.2.99.18); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Curvibacter lanceolatus RepID=UPI00035F171E
scnpilot_p_inoc_scaffold_1708_curated_21
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21872..22573
DNA (702bp) protein (234aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C4Z1_9BURK
scnpilot_p_inoc_scaffold_1708_curated_22
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22575..23264
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q3M9_ACIAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX44271.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1708_curated_23
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23280..24131)
DNA (852bp) protein (284aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XJP5_9MICO
scnpilot_p_inoc_scaffold_1708_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24188..25636)
DNA (1449bp) protein (483aa)
glutamyl-tRNA(gln) amidotransferase, b subunit; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=Alicycliphilus denitrificans RepID=E8TUS4_ALIDB
scnpilot_p_inoc_scaffold_1708_curated_25
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(25633..26640)
DNA (1008bp) protein (336aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Acidovorax avenae RepID=UPI0002D82689
Cobyrinic acid ac-diamide synthase
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
scnpilot_p_inoc_scaffold_1708_curated_26
unknown

Not on your lists

comp(26637..26747)
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 26 items

View Taxonomy