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scnpilot_p_inoc_scaffold_351_curated

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Displaying items 61-90 of 162 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_351_curated_61
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69098..70396)
DNA (1299bp) protein (433aa)
DctM-like transporter n=1 Tax=uncultured organism RepID=T1WAG2_9ZZZZ
TRAP dicarboxylate transporter subunit DctM
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_351_curated_62
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70393..70971)
DNA (579bp) protein (193aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCR5_ACIET
tripartite ATP-independent periplasmic transporter dctq component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ACM32065.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_351_curated_63
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71135..72076
DNA (942bp) protein (314aa)
LysR family transcriptional regulator id=12551149 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_64
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72317..73201
DNA (885bp) protein (295aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Acidovorax sp. CF316 RepID=J1EEP2_9BURK
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJA12025.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
extracellular solute-binding protein
scnpilot_p_inoc_scaffold_351_curated_65
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

73324..74226
DNA (903bp) protein (301aa)
Extracellular solute-binding protein family 3 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYT7_ALIDB
ABC transporter substrate-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADU98462.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_351_curated_66
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74324..75079
DNA (756bp) protein (252aa)
Glutamate/aspartate transport system permease n=2 Tax=Delftia acidovorans RepID=S2WPJ0_DELAC
Glutamate ABC transporter permease {ECO:0000313|EMBL:KEH13491.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
glutamate/aspartate transporterpermease gltJ; K10003 glutamate/aspartate transport system permease protein
scnpilot_p_inoc_scaffold_351_curated_67
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75081..75752
DNA (672bp) protein (224aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5Q2_ACIDE
polar amino acid ABC transporter permease
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EER60195.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_351_curated_68
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75779..76516
DNA (738bp) protein (246aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K10004 glutamate/aspartate transport system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU0_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADU98465.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_351_curated_69
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76641..77699
DNA (1059bp) protein (353aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T5Q4_ACIDE
scnpilot_p_inoc_scaffold_351_curated_70
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

77920..78801
DNA (882bp) protein (294aa)
peptidase M48, Ste24p; K03799 heat shock protein HtpX [EC:3.4.24.-]
heat shock protein HtpX id=12551157 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_71
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79082..80836)
DNA (1755bp) protein (585aa)
FAD dependent oxidoreductase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q605_ACIAP
FAD dependent oxidoreductase; K07137
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_72
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

81239..82096
DNA (858bp) protein (286aa)
hypothetical protein id=12553888 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM42210.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_351_curated_73
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82195..83310
DNA (1116bp) protein (372aa)
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1] id=12551276 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_74
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83324..84244)
DNA (921bp) protein (307aa)
cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47]
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Cysteine synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRX5_ALIDB
scnpilot_p_inoc_scaffold_351_curated_75
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84335..84940)
DNA (606bp) protein (202aa)
methyltransferase id=12551167 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_76
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85369..86148)
DNA (780bp) protein (260aa)
RNA-binding s4 domain-containing protein; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
RNA-binding S4 domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MFT4_ACIET
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_77
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86141..87805)
DNA (1665bp) protein (555aa)
beta-lactamase domain-containing protein id=12551172 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
beta-lactamase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_78
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

87865..88914
DNA (1050bp) protein (350aa)
hypothetical protein; K07098 id=5082352 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein; K07098
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_p_inoc_scaffold_351_curated_79
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88917..89621)
DNA (705bp) protein (235aa)
glutathione S-transferase domain-containing protein; K11209 GST-like protein id=12551176 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
glutathione S-transferase domain-containing protein; K11209 GST-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_80
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89681..90559
DNA (879bp) protein (293aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7) id=12551177 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_81
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90556..91275
DNA (720bp) protein (240aa)
hypothetical protein id=12551178 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_82
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91333..92406
DNA (1074bp) protein (358aa)
phage integrase family protein id=12551179 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
tyrosine recombinase XerC; K03733 integrase/recombinase XerC
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_83
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92481..92867
DNA (387bp) protein (129aa)
id=12551180 bin=BDI tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_84
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93045..95318
DNA (2274bp) protein (758aa)
tonb-dependent receptor; K02014 iron complex outermembrane recepter protein id=12551181 bin=BDI species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
tonb-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_85
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95334..95759
DNA (426bp) protein (142aa)
Biopolymer transport protein exbB id=1270152 bin=GWE1_Burkholderiales_65_30 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
exbB; biopolymer transport protein Exbb; K03561 biopolymer transport protein ExbB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_86
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

95762..96130
DNA (369bp) protein (123aa)
exbD; biopolymer transport protein ExbD; K03559 biopolymer transport protein ExbD id=12551183 bin=BDI species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=BDI organism_group=Betaproteobacteria
exbD; biopolymer transport protein ExbD; K03559 biopolymer transport protein ExbD
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_87
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96127..96870
DNA (744bp) protein (248aa)
Ferric siderophore transport system, periplasmic binding protein TonB id=12551184 bin=BDI species=uncultured Desulfofustis sp. PB-SRB1 genus=Desulfofustis taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ferric siderophore transport system, periplasmic binding protein TonB; K03832 periplasmic protein TonB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_88
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

96872..101035
DNA (4164bp) protein (1388aa)
cobN; cobaltochelatase subunit CobN (EC:6.6.1.2); K02230 cobaltochelatase CobN [EC:6.6.1.2] rbh
CobN/magnesium chelatase id=1270155 bin=GWE1_Burkholderiales_65_30 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_89
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101032..101577
DNA (546bp) protein (182aa)
hypothetical protein id=12551186 bin=BDI species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_351_curated_90
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101570..101929
DNA (360bp) protein (120aa)
hypothetical protein id=12551187 bin=BDI species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 61-90 of 162 in total

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