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scnpilot_p_inoc_scaffold_1862_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1862_curated_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(255..1094)
DNA (840bp) protein (280aa)
AraC family transcriptional regulator n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C1E1E
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACT92128.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1189..2094)
DNA (906bp) protein (302aa)
alpha/beta hydrolase n=1 Tax=Dyadobacter beijingensis RepID=UPI00036FEDF9
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACT92129.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_3
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2242..2697)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003628716
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:ACT92130.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_4
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(2776..3168)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003628716
Putative secreted protein {ECO:0000313|EMBL:CCH53466.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1862_curated_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3258..3581)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000363A0FD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT92132.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_6
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3662..4447)
DNA (786bp) protein (262aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W329_DYAFD
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACT92133.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4595..4939
DNA (345bp) protein (115aa)
Transcriptional regulator, HxlR family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W330_DYAFD
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACT92134.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4911..5213)
DNA (303bp) protein (101aa)
condensation protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003705356
condensation domain-containing protein
Condensation domain-containing protein {ECO:0000313|EMBL:ACT92135.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1862_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(6067..8460)
DNA (2394bp) protein (798aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036FC3A5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38203.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_1862_curated_10
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8721..9053)
DNA (333bp) protein (111aa)
Transcriptional regulator, PadR-like family n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GMR6_9BACT
Transcriptional regulator, PadR-like family {ECO:0000313|EMBL:CCH55194.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
PadR family transcriptional regulator
scnpilot_p_inoc_scaffold_1862_curated_11
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9303..9488)
DNA (186bp) protein (62aa)
Mobile element protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZXG6_9BACT
Mobile element protein {ECO:0000313|EMBL:EON78703.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
transposase
scnpilot_p_inoc_scaffold_1862_curated_12
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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10258..11364
DNA (1107bp) protein (369aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G3N4_9SPHI
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEI90239.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
scnpilot_p_inoc_scaffold_1862_curated_13
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11424..12005
DNA (582bp) protein (194aa)
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0D6_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ22749.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
RNA polymerase sigma-70 factor
scnpilot_p_inoc_scaffold_1862_curated_14
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12143..13135
DNA (993bp) protein (331aa)
Anti-FecI sigma factor, FecR n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YE35_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ22750.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
anti-FecI sigma factor FecR
scnpilot_p_inoc_scaffold_1862_curated_15
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13199..15820
DNA (2622bp) protein (874aa)
TonB-dependent receptor n=1 Tax=Niabella soli DSM 19437 RepID=H1NN17_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ22313.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
TonB-dependent receptor
Displaying 15 items

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