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scnpilot_p_inoc_scaffold_1648_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1648_curated_1
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(51..3419)
DNA (3369bp) protein (1123aa)
Putative outer membrane protein id=1881722 bin=GWE2_Bacteroidetes_42_39 species=Pedobacter sp. BAL39 genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
TonB-dependent receptor plug
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_p_inoc_scaffold_1648_curated_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(3786..4877)
DNA (1092bp) protein (364aa)
Anti-FecI sigma factor, FecR n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EL18_RUNSL
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEI51244.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_1648_curated_3
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(4960..5586)
DNA (627bp) protein (209aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EL17_RUNSL
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEI51243.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_1648_curated_4
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5674..7776)
DNA (2103bp) protein (701aa)
Coagulation factor 5/8 type domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QMY1_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ETZ24910.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
coagulation factor 5/8 type domain protein
scnpilot_p_inoc_scaffold_1648_curated_5
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7898..8773
DNA (876bp) protein (292aa)
Transcriptional regulator, AraC family n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFT4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:ETZ24913.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
regulatory helix-turn-helix protein
scnpilot_p_inoc_scaffold_1648_curated_6
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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8947..9660
DNA (714bp) protein (238aa)
Transcriptional regulator, AraC family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E9A4_9SPHI
AraC family transcriptional regulator {ECO:0000313|EMBL:KGO92361.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1648_curated_7
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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9657..9959
DNA (303bp) protein (101aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PGR7_CHIPD
AraC family transcriptional regulator {ECO:0000313|EMBL:KFF13469.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1648_curated_8
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10027..10299
DNA (273bp) protein (91aa)
short-chain dehydrogenase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000378DF0A
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC54724.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
short-chain dehydrogenase/reductase SDR
scnpilot_p_inoc_scaffold_1648_curated_9
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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10299..10613
DNA (315bp) protein (105aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W350_DYAFD
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACT92154.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1648_curated_10
Aliivibrio fischeri, Aliivibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10622..11011)
DNA (390bp) protein (130aa)
Transcriptional repressor rstR n=1 Tax=Vibrio fischeri (strain ATCC 700601 / ES114) RepID=Q5DZZ4_VIBF1
rstR; transcriptional repressor RstR
Transcriptional repressor rstR {ECO:0000313|EMBL:AAW87652.1}; TaxID=312309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio.;" source="Vibrio fischeri (strain ATCC 700601 / ES114).;"
scnpilot_p_inoc_scaffold_1648_curated_11
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11063..12247)
DNA (1185bp) protein (395aa)
NAD-dependent dehydratase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6CDA2
Selenocysteine lyase {ECO:0000313|EMBL:AKH68724.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spongiibacter sp. IMCC21906.;"
scnpilot_p_inoc_scaffold_1648_curated_12
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12248..13426)
DNA (1179bp) protein (393aa)
NAD-dependent epimerase/dehydratase; K06118 UDP-sulfoquinovose synthase [EC:3.13.1.1]
NAD-dependent dehydratase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B6CDA2
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EIF43316.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
scnpilot_p_inoc_scaffold_1648_curated_13
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13449..16316)
DNA (2868bp) protein (956aa)
TPR repeat-containing protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF16_CHIPD">RepID=C7PF16_CHIPD
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACU59743.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_1648_curated_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(16320..17801)
DNA (1482bp) protein (494aa)
Glycosyl transferase family 2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF17_CHIPD">RepID=C7PF17_CHIPD
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACU59744.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying 14 items

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