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scnpilot_p_inoc_scaffold_492_curated

Search features with annotation key words

Displaying items 91-120 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_492_curated_91
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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92155..92607
DNA (453bp) protein (151aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
50S ribosomal protein L15 id=2532966 bin=GWF1_Flavobacteria_32_7 species=unknown genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
scnpilot_p_inoc_scaffold_492_curated_92
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


92621..93967
DNA (1347bp) protein (449aa)
Preprotein translocase subunit SecY n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S8X6_9FLAO
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
scnpilot_p_inoc_scaffold_492_curated_93
Flavobacterium branchiophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

93973..94188
DNA (216bp) protein (72aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 id=4226182 bin=GWA2_Flavobacterium_35_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:CCB70548.1}; TaxID=1034807 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium branchiophilum (strain FL-15).;"
scnpilot_p_inoc_scaffold_492_curated_94
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

94200..94316
DNA (117bp) protein (39aa)
rpmJ; 50S ribosomal protein L36; K02919 large subunit ribosomal protein L36
50S ribosomal protein L36 id=2532953 bin=GWF1_Flavobacteria_32_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=883150 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CCUG 10230.;"
scnpilot_p_inoc_scaffold_492_curated_95
Flavobacterium enshiense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


94319..94693
DNA (375bp) protein (125aa)
RpsM protein n=1 Tax=Flavobacterium enshiense DK69 RepID=V6S648_9FLAO
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1107311 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium enshiense DK69.;"
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
scnpilot_p_inoc_scaffold_492_curated_96
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


94705..95088
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=3 Tax=Flavobacterium RepID=V6S3M3_9FLAO
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
scnpilot_p_inoc_scaffold_492_curated_97
unknown

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comp(95027..95146)
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_492_curated_98
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


95175..95780
DNA (606bp) protein (202aa)
30S ribosomal protein S4 n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2C6_9FLAO
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
scnpilot_p_inoc_scaffold_492_curated_99
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

95845..96798
DNA (954bp) protein (318aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
rpoA; DNA-directed RNA polymerase alpha subunit RpoA (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase alpha subunit RpoA n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SGN4_9FLAO
scnpilot_p_inoc_scaffold_492_curated_100
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists


96835..97320
DNA (486bp) protein (162aa)
RplQ protein n=3 Tax=Flavobacterium RepID=V6S358_9FLAO
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_p_inoc_scaffold_492_curated_101
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

97513..98622
DNA (1110bp) protein (370aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
carA; Carbamoyl-phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthetase, small subunit n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S3L8_9FLAO
scnpilot_p_inoc_scaffold_492_curated_102
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

98673..99965
DNA (1293bp) protein (431aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
eno; Phosphopyruvate hydratase (EC:4.2.1.11); K01689 enolase [EC:4.2.1.11]
Phosphopyruvate hydratase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2C0_9FLAO
scnpilot_p_inoc_scaffold_492_curated_103
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

100258..101541
DNA (1284bp) protein (428aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
gltA; citrate (Si)-synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1]
Citrate (Si)-synthase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2F9_9FLAO
scnpilot_p_inoc_scaffold_492_curated_104
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(101600..101971)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S3L3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU20842.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_492_curated_105
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

102163..103077
DNA (915bp) protein (305aa)
Amidinotransferase family protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2B5_9FLAO
Amidinotransferase family protein {ECO:0000313|EMBL:ESU20841.1}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
Amidinotransferase family protein
scnpilot_p_inoc_scaffold_492_curated_106
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

103099..104037
DNA (939bp) protein (313aa)
Pentein-type domain-containing protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SA57_9FLAO
Pentein-type domain-containing protein {ECO:0000313|EMBL:ESU23563.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
hypothetical protein
scnpilot_p_inoc_scaffold_492_curated_107
Flavobacterium hydatis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(104102..105004)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1KVS0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF18192.1}; TaxID=991 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hydatis (Cytophaga aquatilis).;"
hypothetical protein
scnpilot_p_inoc_scaffold_492_curated_108
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

105414..107543
DNA (2130bp) protein (710aa)
Outer membrane cobalamin receptor protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C838_9FLAO
TonB-dependent Receptor; K02014 iron complex outermembrane recepter protein
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:EIJ39781.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
scnpilot_p_inoc_scaffold_492_curated_109
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

107548..108951
DNA (1404bp) protein (468aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00038029F9
Uncharacterized protein {ECO:0000313|EMBL:KJD31083.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_492_curated_110
Tamlana nanhaiensis, Tamlana, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

108969..110228
DNA (1260bp) protein (420aa)
Putative uncharacterized protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6ELW3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KJD31082.1}; TaxID=1382798 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tamlana.;" source="Tamlana nanhaiensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_492_curated_111
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(110311..110940)
DNA (630bp) protein (210aa)
Multiple antibiotic resistance (MarC)-like protein n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2F4_9FLAO
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
multiple antibiotic resistance (MarC)-like protein; K05595 multiple antibiotic resistance protein
scnpilot_p_inoc_scaffold_492_curated_112
Flavobacterium suncheonense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

111090..111446
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) RepID=H8XSP9_FLAIG
CoA-binding protein {ECO:0000313|EMBL:KGO89366.1}; TaxID=1121899 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium suncheonense GH29-5 = DSM 17707.;"
hypothetical protein; K06929
scnpilot_p_inoc_scaffold_492_curated_113
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(111443..112948)
DNA (1506bp) protein (502aa)
Sodium/iodide co-transporter n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FMP7_9FLAO
Sodium:solute symporter {ECO:0000313|EMBL:KGO84276.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
Sodium:solute symporter
scnpilot_p_inoc_scaffold_492_curated_114
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

113059..113679
DNA (621bp) protein (207aa)
RecR protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SA52_9FLAO
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
recR; recombination protein RecR; K06187 recombination protein RecR
scnpilot_p_inoc_scaffold_492_curated_115
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

113775..114572
DNA (798bp) protein (266aa)
Polysaccharide exporter n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SBD1_9FLAO
Polysaccharide exporter {ECO:0000313|EMBL:ESU23557.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
polysaccharide exporter
scnpilot_p_inoc_scaffold_492_curated_116
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

114578..117034
DNA (2457bp) protein (819aa)
Tyrosine-protein kinase involved in exopolysaccharide biosynthesis n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SA81_9FLAO
Tyrosine-protein kinase involved in exopolysaccharide biosynthesis {ECO:0000313|EMBL:ESU23556.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
tyrosine-protein kinase involved in exopolysaccharide biosynthesis
scnpilot_p_inoc_scaffold_492_curated_117
Polaribacter sp. Hel1_85, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

117034..117906
DNA (873bp) protein (291aa)
O-antigen export system, permease protein n=1 Tax=Formosa sp. AK20 RepID=M7NAH7_9FLAO
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1250005 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. Hel1_85.;"
ABC-2 type transporter; K09690 lipopolysaccharide transport system permease protein
scnpilot_p_inoc_scaffold_492_curated_118
Flavobacterium cauense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

118052..119443
DNA (1392bp) protein (464aa)
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ESU20831.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ESU20831.1};; TaxID=1341154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium cauense R2A-7.;"
ugd; UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase n=1 Tax=Flavobacterium cauense R2A-7 RepID=V6S2A6_9FLAO
scnpilot_p_inoc_scaffold_492_curated_119
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

119595..120122
DNA (528bp) protein (176aa)
PaaX family transcriptional regulator n=1 Tax=Imtechella halotolerans K1 RepID=I0W6K0_9FLAO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
scnpilot_p_inoc_scaffold_492_curated_120
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

120206..121174
DNA (969bp) protein (323aa)
UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
NAD-dependent epimerase/dehydratase n=1 Tax=Flavobacterium sp. F52 RepID=J1KVE2_9FLAO
Epimerase {ECO:0000313|EMBL:KFC59340.1}; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
Displaying items 91-120 of 141 in total

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