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scnpilot_p_inoc_scaffold_1782_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1782_curated_1
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..1218
DNA (1218bp) protein (406aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUU5_RUBGI
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor; K03776 aerotaxis receptor
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_p_inoc_scaffold_1782_curated_2
Marichromatium purpuratum, Marichromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1218..4934
DNA (3717bp) protein (1239aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Marichromatium purpuratum 984 RepID=F9TWS4_MARPU
Chemotaxis protein CheY {ECO:0000313|EMBL:AHF03546.1}; TaxID=765910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Marichromatium.;" source="Marichromatium purpuratum 984.;"
multi-sensor hybrid histidine kinase
scnpilot_p_inoc_scaffold_1782_curated_3
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4953..6974)
DNA (2022bp) protein (674aa)
PAS sensor protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U0I9_ALIDB
PAS/PAC sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
scnpilot_p_inoc_scaffold_1782_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7078..8757)
DNA (1680bp) protein (560aa)
Sulfate transporter n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MGF4_9BURK
Sulfate transporter {ECO:0000313|EMBL:EIK88294.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
sulfate transporter
scnpilot_p_inoc_scaffold_1782_curated_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8845..10290)
DNA (1446bp) protein (482aa)
Putative 4-(hydroxymethyl)benzenesulfonate dehydrogenase TsaD2; EC=1.1.1.257;; Toluenesulfonate aldehyde dehydrogenase TsaD; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Putative 4-(hydroxymethyl)benzenesulfonate dehydrogenase TsaD2 n=1 Tax=Comamonas testosteroni RepID=TSAD2_COMTE rbh
scnpilot_p_inoc_scaffold_1782_curated_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10287..11045)
DNA (759bp) protein (253aa)
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2; EC=1.2.1.62;; Toluenesulfonate zinc-independent alcohol dehydrogenase TsaC; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2 n=1 Tax=Comamonas testosteroni RepID=TSAC_COMTE rbh
scnpilot_p_inoc_scaffold_1782_curated_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11055..12011)
DNA (957bp) protein (319aa)
Putative toluene-4-sulfonate monooxygenase system reductase subunit TsaB2; EC=1.5.1.-;; Toluenesulfonate methyl-monooxygenase reductase component TsaB2; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
ferredoxin:oxidoreductase FAD/NAD(P)-binding subunit; K03863 vanillate monooxygenase [EC:1.14.13.82]
Putative toluene-4-sulfonate monooxygenase system reductase subunit TsaB2 n=1 Tax=Comamonas testosteroni RepID=TSAB2_COMTE rbh
scnpilot_p_inoc_scaffold_1782_curated_8
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12008..13048)
DNA (1041bp) protein (347aa)
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1; EC=1.14.14.-;; TS methylmonooxygenase system, oxygenase M; Toluenesulfonate methyl-monooxygenase oxygenase component TsaM1; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
rieske [2Fe-2S] domain-containing protein 5; K03862 vanillate monooxygenase [EC:1.14.13.82]
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 n=1 Tax=Comamonas testosteroni RepID=TSAM1_COMTE rbh
scnpilot_p_inoc_scaffold_1782_curated_9
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13068..14588)
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Marinobacterium rhizophilum RepID=UPI000372F66A
Tricarboxylate transport membrane protein TctA {ECO:0000313|EMBL:KEA65229.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1782_curated_10
unknown

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comp(14585..15085)
DNA (501bp) protein (167aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1782_curated_11
Desulfarculus sp. SPR, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15093..16064)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI0003737523
Contig_5, whole genome shotgun sequence {ECO:0000313|EMBL:KIX11785.1}; TaxID=1429043 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus sp. SPR.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1782_curated_12
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16191..16688
DNA (498bp) protein (166aa)
LysR type regulator of tsaMBCD n=1 Tax=Comamonas testosteroni RepID=P94678_COMTE
HTH-type transcriptional regulator TsaR; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
LysR family transcriptional regulator
Displaying 12 items

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