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scnpilot_p_inoc_scaffold_2210_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2210_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..791)
DNA (789bp) protein (263aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1]
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP59_9BURK
scnpilot_p_inoc_scaffold_2210_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(800..1750)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP58_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90998.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K15539 cytoskeleton protein RodZ
scnpilot_p_inoc_scaffold_2210_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1743..2588)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP57_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90997.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K02656 type IV pilus assembly protein PilF
scnpilot_p_inoc_scaffold_2210_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2585..3736)
DNA (1152bp) protein (384aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=7
hypothetical protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP56_9BURK
scnpilot_p_inoc_scaffold_2210_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3744..4169)
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Nucleoside diphosphate kinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP55_9BURK
similar to GK19226
scnpilot_p_inoc_scaffold_2210_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4249..5541)
DNA (1293bp) protein (431aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP54_9BURK
scnpilot_p_inoc_scaffold_2210_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5507..6274)
DNA (768bp) protein (256aa)
Condensin subunit ScpB n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP53_9BURK
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
scnpilot_p_inoc_scaffold_2210_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6401..7438)
DNA (1038bp) protein (346aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP52_9BURK
scnpilot_p_inoc_scaffold_2210_curated_9
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8249
DNA (807bp) protein (269aa)
Outer membrane protein assembly factor BamD n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP51_9BURK
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein; K05807 putative lipoprotein
scnpilot_p_inoc_scaffold_2210_curated_10
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8212..10209)
DNA (1998bp) protein (666aa)
Helicase c2 n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP50_9BURK
Helicase c2 {ECO:0000313|EMBL:EIK90990.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
helicase c2
scnpilot_p_inoc_scaffold_2210_curated_11
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10358..11116
DNA (759bp) protein (253aa)
Protein serine/threonine phosphatase {ECO:0000313|EMBL:EIK90989.1}; EC=3.1.3.16 {ECO:0000313|EMBL:EIK90989.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Protein serine/threonine phosphatase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP49_9BURK
hypothetical protein
scnpilot_p_inoc_scaffold_2210_curated_12
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11126..12223)
DNA (1098bp) protein (366aa)
AFG1-like protein ATPase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP48_9BURK
AFG1-like protein ATPase {ECO:0000313|EMBL:EIK90988.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
AFG1-like protein ATPase; K06916
scnpilot_p_inoc_scaffold_2210_curated_13
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12231..13679)
DNA (1449bp) protein (483aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoamide dehydrogenase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP47_9BURK
Tax=GWA2_Burkholderiales_64_37_curated
Displaying 13 items

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