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scnpilot_p_inoc_scaffold_3293_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3293_curated_1
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..219)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F0E9A
hypothetical protein; K09701 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34123.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_3293_curated_2
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(216..1586)
DNA (1371bp) protein (457aa)
Amine oxidase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM47_9BURK
Amine oxidase {ECO:0000313|EMBL:EIK90287.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
amine oxidase
scnpilot_p_inoc_scaffold_3293_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1707..2381
DNA (675bp) protein (225aa)
RNA polymerase sigma factor n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM46_9BURK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_3293_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2415..3101
DNA (687bp) protein (229aa)
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003809DBD
Anti-ECFsigma factor ChrR {ECO:0000313|EMBL:EIK90285.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
anti-ECFsigma factor ChrR; K07167 putative transcriptional regulator
scnpilot_p_inoc_scaffold_3293_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3064..3549)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM44_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90284.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3293_curated_6
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3583..4221)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT30_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM34118.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_3293_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4218..5024)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM42_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK90282.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
hypothetical protein
scnpilot_p_inoc_scaffold_3293_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5029..6102)
DNA (1074bp) protein (358aa)
Type 11 methyltransferase {ECO:0000313|EMBL:EIK90281.1}; EC=2.1.1.79 {ECO:0000313|EMBL:EIK90281.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
type 11 methyltransferase; K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
Type 11 methyltransferase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MM41_9BURK
scnpilot_p_inoc_scaffold_3293_curated_9
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6174..6692)
DNA (519bp) protein (173aa)
MarR family transcriptional regulator id=5080890 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
MarR family transcriptional regulator
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_3293_curated_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6746..7765
DNA (1020bp) protein (340aa)
Candidate extracytoplasmic binding receptor id=1270985 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
tctC; extracytoplasmic binding receptor
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_3293_curated_11
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7796..8764
DNA (969bp) protein (323aa)
Extracytoplasmic binding receptor id=1270986 bin=GWE1_Burkholderiales_65_30 species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
tctC; extracytoplasmic binding receptor
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_3293_curated_12
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8772..10097
DNA (1326bp) protein (442aa)
Arylsulfatase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XWR3_RAMTT
arylsulfatase
Tax=GWA2_Curvibacter_64_110_curated
scnpilot_p_inoc_scaffold_3293_curated_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10088..10579)
DNA (492bp) protein (164aa)
LysR type regulator of tsaMBCD n=1 Tax=Comamonas testosteroni RepID=P94678_COMTE
HTH-type transcriptional regulator TsaR; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
LysR family transcriptional regulator
Displaying 13 items

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