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scnpilot_p_inoc_scaffold_1334_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1334_curated_1
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1126
DNA (1125bp) protein (375aa)
2-oxoacid:ferredoxin oxidoreductase, gamma subunit n=1 Tax=Variovorax sp. CF313 RepID=J2TH41_9BURK
indolepyruvate oxidoreductase subunit b
Tax=GWA2_Curvibacter_64_110_curated
scnpilot_p_inoc_scaffold_1334_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1168..2136
DNA (969bp) protein (323aa)
Putative BUG-like extracytoplasmic solute binding receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XF45_VARPD
putative BUG-like extracytoplasmic solute binding receptor, TTT family
Putative BUG-like extracytoplasmic solute binding receptor, TTT family {ECO:0000313|EMBL:AGU51116.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_1334_curated_3
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2176..2376)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI60_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88900.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
scnpilot_p_inoc_scaffold_1334_curated_4
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2592..3296)
DNA (705bp) protein (235aa)
Urea ABC transporter ATP-binding protein UrtE {ECO:0000313|EMBL:EIK88899.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK88899.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
urea ABC transporter ATP-binding protein UrtE (EC:3.6.3.28); K01996 branched-chain amino acid transport system ATP-binding protein
Urea ABC transporter ATP-binding protein UrtE n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI59_9BURK
scnpilot_p_inoc_scaffold_1334_curated_5
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3307..4182)
DNA (876bp) protein (292aa)
Urea ABC transporter, ATP-binding protein UrtD {ECO:0000313|EMBL:EIK88898.1}; EC=3.6.1.3 {ECO:0000313|EMBL:EIK88898.1};; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Urea ABC transporter, ATP-binding protein UrtD n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI58_9BURK
ABC transporter-like protein
scnpilot_p_inoc_scaffold_1334_curated_6
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4179..5303)
DNA (1125bp) protein (375aa)
Inner-membrane translocator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI57_9BURK
Inner-membrane translocator {ECO:0000313|EMBL:EIK88897.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
inner-membrane translocator
scnpilot_p_inoc_scaffold_1334_curated_7
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5300..6898)
DNA (1599bp) protein (533aa)
Urea ABC transporter permease urtb n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI56_9BURK
Urea ABC transporter permease urtb {ECO:0000313|EMBL:EIK88896.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_1334_curated_8
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6917..8224)
DNA (1308bp) protein (436aa)
Branched-chain amino acid ABC transporter periplasmic amino acid-binding protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI55_9BURK
Branched-chain amino acid ABC transporter periplasmic amino acid-binding protein {ECO:0000313|EMBL:EIK88895.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
branched-chain amino acid ABC transporter periplasmic amino acid-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1334_curated_9
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8417..8641)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034A8C82
Uncharacterized protein {ECO:0000313|EMBL:AIU27680.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1334_curated_10
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8634..10706)
DNA (2073bp) protein (691aa)
carbon starvation protein A n=1 Tax=Acidovorax avenae RepID=UPI0002E2E757
carbon starvation protein CstA; K06200 carbon starvation protein
Carbon starvation protein CstA {ECO:0000313|EMBL:ADX48000.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1334_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10873..11508)
DNA (636bp) protein (212aa)
Transcriptional regulator, LuxR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XE70_VARPD
transcriptional regulator, LuxR family
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU51222.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_1334_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11517..12845)
DNA (1329bp) protein (443aa)
Putative signal transduction histidine kinase n=1 Tax=Variovorax paradoxus B4 RepID=T1XF81_VARPD
putative signal transduction histidine kinase
Putative signal transduction histidine kinase {ECO:0000313|EMBL:AGU51223.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_1334_curated_13
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12897..13913)
DNA (1017bp) protein (339aa)
Response regulator receiver protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI53_9BURK
Response regulator receiver protein {ECO:0000313|EMBL:EIK88893.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
two component LuxR family transcriptional regulator
scnpilot_p_inoc_scaffold_1334_curated_14
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13906..17418)
DNA (3513bp) protein (1171aa)
Periplasmic sensor hybrid histidine kinase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI52_9BURK
Periplasmic sensor hybrid histidine kinase {ECO:0000313|EMBL:EIK88892.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
integral membrane sensor hybrid histidine kinase
scnpilot_p_inoc_scaffold_1334_curated_15
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17502..17804
DNA (303bp) protein (101aa)
urease (EC:3.5.1.5); K01430 urease subunit gamma [EC:3.5.1.5]
Urease subunit gamma {ECO:0000255|HAMAP-Rule:MF_00739}; EC=3.5.1.5 {ECO:0000255|HAMAP-Rule:MF_00739};; Urea amidohydrolase subunit gamma {ECO:0000255|HAMAP-Rule:MF_00739}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Urease subunit gamma n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=URE3_METPP
scnpilot_p_inoc_scaffold_1334_curated_16
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17821..18408
DNA (588bp) protein (196aa)
Urease accessory protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI50_9BURK
Urease accessory protein {ECO:0000313|EMBL:EIK88890.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
HupE/UreJ protein; K03192 urease accessory protein
scnpilot_p_inoc_scaffold_1334_curated_17
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18414..18719
DNA (306bp) protein (102aa)
Urease subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01954};; Urea amidohydrolase subunit beta {ECO:0000256|HAMAP-Rule:MF_01954}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
urease subunit beta (EC:3.5.1.5); K01429 urease subunit beta [EC:3.5.1.5]
Urease subunit beta n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI49_9BURK
scnpilot_p_inoc_scaffold_1334_curated_18
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18719..20437
DNA (1719bp) protein (573aa)
Urease subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_01953, ECO:0000256|SAAS:SAAS00033844};; Urea amidohydrolase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01953}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
urease subunit alpha (EC:3.5.1.5); K01428 urease subunit alpha [EC:3.5.1.5]
Urease subunit alpha n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI48_9BURK
scnpilot_p_inoc_scaffold_1334_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20437..20991
DNA (555bp) protein (185aa)
Urease accessory protein UreE n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI47_9BURK
Urease accessory protein UreE {ECO:0000256|HAMAP-Rule:MF_00822, ECO:0000256|SAAS:SAAS00072411}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ureE; urease accessory protein UreE
scnpilot_p_inoc_scaffold_1334_curated_20
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20957..21673
DNA (717bp) protein (239aa)
Urease accessory protein UreF n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI46_9BURK
Urease accessory protein UreF {ECO:0000256|HAMAP-Rule:MF_01385}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
ureF; urease accessory protein; K03188 urease accessory protein
scnpilot_p_inoc_scaffold_1334_curated_21
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21670..22341
DNA (672bp) protein (224aa)
Urease accessory protein UreG n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI45_9BURK
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
urease accessory protein UreG; K03189 urease accessory protein
scnpilot_p_inoc_scaffold_1334_curated_22
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22573..22689
DNA (117bp) protein (39aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MI44_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK88884.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
Displaying 22 items

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