ggKbase home page

scnpilot_p_inoc_scaffold_595_curated

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_595_curated_1
unknown

Not on your lists

comp(109..264)
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_2
Pseudomonas mandelii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410..1834)
DNA (1425bp) protein (475aa)
hypothetical protein n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A83B8
Uncharacterized protein {ECO:0000313|EMBL:KDD65524.1}; TaxID=1419583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mandelii PD30.;"
scnpilot_p_inoc_scaffold_595_curated_3
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1916..2488)
DNA (573bp) protein (191aa)
Integrase n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FWV7_PHAMO
Integrase {ECO:0000313|EMBL:CCG42845.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
integrase
scnpilot_p_inoc_scaffold_595_curated_4
unknown

Not on your lists

3544..4179
DNA (636bp) protein (212aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_5
unknown

Not on your lists

4184..4666
DNA (483bp) protein (161aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_6
unknown

Not on your lists

5264..5698
DNA (435bp) protein (145aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_7
unknown

Not on your lists

comp(5695..6474)
DNA (780bp) protein (260aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_8
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6471..7082)
DNA (612bp) protein (204aa)
6-pyruvoyl tetrahydrobiopterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
Queuosine biosynthesis QueD, PTPS-I n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G4N6_BURVI
6-pyruvoyl tetrahydropterin synthase family protein {ECO:0000313|EMBL:AIO27227.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
scnpilot_p_inoc_scaffold_595_curated_9
unknown

Not on your lists

comp(7079..7423)
DNA (345bp) protein (115aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_595_curated_10
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7442..9052)
DNA (1611bp) protein (537aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W0Q4_MAGSA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE52571.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_595_curated_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9043..9384)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VWK9_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY28584.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
scnpilot_p_inoc_scaffold_595_curated_12
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9384..10529)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VWK8_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY28583.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
scnpilot_p_inoc_scaffold_595_curated_13
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10756..12114)
DNA (1359bp) protein (453aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI00031444AB
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
scnpilot_p_inoc_scaffold_595_curated_14
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12647..13255)
DNA (609bp) protein (203aa)
LuxR family transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A5E1_9PROT
LuxR family transcriptional regulator {ECO:0000313|EMBL:EME68043.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
two-component response regulator
scnpilot_p_inoc_scaffold_595_curated_15
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13252..14838)
DNA (1587bp) protein (529aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A6E8_9PROT
two-component sensor histidine kinase
scnpilot_p_inoc_scaffold_595_curated_16
Paenibacillus borealis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15095..16297
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Bacillus cereus RepID=UPI000347324A
Uncharacterized protein {ECO:0000313|EMBL:AIQ61686.1}; TaxID=160799 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus borealis.;"
scnpilot_p_inoc_scaffold_595_curated_17
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16376..18070)
DNA (1695bp) protein (565aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W0P6_MAGSA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAE52579.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_595_curated_18
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18189..18515)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2T1_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM77188.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
hypothetical protein
scnpilot_p_inoc_scaffold_595_curated_19
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18614..19975)
DNA (1362bp) protein (454aa)
Tyrosine recombinase xerD n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W0Z9_MAGSA
tyrosine recombinase xerD
Tyrosine recombinase xerD {ECO:0000313|EMBL:BAE52476.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
scnpilot_p_inoc_scaffold_595_curated_20
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20103..20558)
DNA (456bp) protein (152aa)
DNA polymerase III subunit chi {ECO:0000313|EMBL:CDL01220.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CDL01220.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7]
DNA polymerase III subunit chi n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6S3_9PROT
scnpilot_p_inoc_scaffold_595_curated_21
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20568..21836)
DNA (1269bp) protein (423aa)
Leucyl aminopeptidase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U221_9PROT
Leucyl aminopeptidase {ECO:0000313|EMBL:CAM76928.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
leucyl aminopeptidase
scnpilot_p_inoc_scaffold_595_curated_22
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21871..23361)
DNA (1491bp) protein (497aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1]
Probable cytosol aminopeptidase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U220_9PROT
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_595_curated_23
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23416..24423)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F766_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDL01217.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_595_curated_24
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24468..25556)
DNA (1089bp) protein (363aa)
Radical SAM domain-containing protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
Pyruvate formate lyase-activating enzyme n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U218_9PROT
Pyruvate formate lyase-activating enzyme {ECO:0000313|EMBL:CAM76925.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
scnpilot_p_inoc_scaffold_595_curated_25
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25606..26979
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6R7_9PROT
MEMO1 family protein MGMSRv2__4000 {ECO:0000256|HAMAP-Rule:MF_00055}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
dioxygenase; K06990
scnpilot_p_inoc_scaffold_595_curated_26
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27005..27766
DNA (762bp) protein (254aa)
PAPS (Adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:CDL01211.1}; EC=3.1.3.7 {ECO:0000313|EMBL:CDL01211.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
3'-phosphoadenosine 5'-phosphosulfate 3'-phosphatase; K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
PAPS (Adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F8X9_9PROT
scnpilot_p_inoc_scaffold_595_curated_27
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27959..29224
DNA (1266bp) protein (422aa)
Outer membrane protein transport protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U215_9PROT
Outer membrane protein transport protein {ECO:0000313|EMBL:CAM76922.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
aromatic hydrocarbon degradation membrane protein; K06076 long-chain fatty acid transport protein
scnpilot_p_inoc_scaffold_595_curated_28
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29246..30226
DNA (981bp) protein (327aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
tRNA threonylcarbamoyladenosine biosynthesis protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6R2_9PROT
putative translation factor; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
scnpilot_p_inoc_scaffold_595_curated_29
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30230..31627
DNA (1398bp) protein (466aa)
Putative glycolate oxidase subunit, FAD-linked {ECO:0000313|EMBL:CDL01209.1}; EC=1.1.-.- {ECO:0000313|EMBL:CDL01209.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Putative glycolate oxidase subunit, FAD-linked n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6X8_9PROT
FAD/FMN-containing dehydrogenase
scnpilot_p_inoc_scaffold_595_curated_30
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31707..32828
DNA (1122bp) protein (374aa)
Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F8X7_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM74442.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
permease; K07091 lipopolysaccharide export system permease protein
Displaying items 1-30 of 57 in total

View Taxonomy