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scnpilot_p_inoc_scaffold_62_curated

Search features with annotation key words

Displaying items 1-30 of 271 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_62_curated_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..620)
DNA (618bp) protein (206aa)
Putative electron transfer flavoprotein dehydrogenases {ECO:0000313|EMBL:CDL00244.1}; EC=1.5.5.1 {ECO:0000313|EMBL:CDL00244.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
dehydrogenase; K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron transfer flavoprotein-ubiquinone oxidoreductase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F061_9PROT
scnpilot_p_inoc_scaffold_62_curated_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

754..1557
DNA (804bp) protein (268aa)
Putative DNA polymerases {ECO:0000313|EMBL:CDL00243.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CDL00243.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Putative DNA polymerases n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6Y2_9PROT
scnpilot_p_inoc_scaffold_62_curated_3
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1717..3531
DNA (1815bp) protein (605aa)
Lytic transglycosylase, catalytic n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TW09_9PROT
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:CAM74816.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
soluble lytic murein transglycosylase and related regulatory protein
scnpilot_p_inoc_scaffold_62_curated_4
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3671..4624
DNA (954bp) protein (318aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetos
mpsA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2]
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TW10_9PROT
scnpilot_p_inoc_scaffold_62_curated_5
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4647..5387
DNA (741bp) protein (247aa)
Glycosyl transferase, group 2 family protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TW11_9PROT
Glycosyl transferase, group 2 family protein {ECO:0000313|EMBL:CDL00240.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
cell wall biosynthesis glycosyltransferase
scnpilot_p_inoc_scaffold_62_curated_6
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5399..6100
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F454_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDL00239.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_62_curated_7
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6100..6687
DNA (588bp) protein (196aa)
Periplasmic or secreted lipoprotein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TW13_9PROT
Periplasmic or secreted lipoprotein {ECO:0000313|EMBL:CAM74820.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
periplasmic or secreted lipoprotein
scnpilot_p_inoc_scaffold_62_curated_8
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6740..7198)
DNA (459bp) protein (153aa)
Transcription elongation factor GreA n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TW15_9PROT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
scnpilot_p_inoc_scaffold_62_curated_9
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7232..10483)
DNA (3252bp) protein (1084aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TW16_9PROT
scnpilot_p_inoc_scaffold_62_curated_10
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10547..11710)
DNA (1164bp) protein (388aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
carA; carbamoyl-phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TW17_9PROT
scnpilot_p_inoc_scaffold_62_curated_11
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12027..12485
DNA (459bp) protein (153aa)
GatB/Yqey n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TU02_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDL00233.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
hypothetical protein; K09117 hypothetical protein
scnpilot_p_inoc_scaffold_62_curated_12
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12511..14391
DNA (1881bp) protein (627aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F4B0_9PROT
scnpilot_p_inoc_scaffold_62_curated_13
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14465..16459
DNA (1995bp) protein (665aa)
RNA polymerase sigma factor RpoD n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U313_9PROT
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor
scnpilot_p_inoc_scaffold_62_curated_14
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16807..17901
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E9I6_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ32830.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
scnpilot_p_inoc_scaffold_62_curated_15
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17964..18167
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F0P8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CDK97846.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
scnpilot_p_inoc_scaffold_62_curated_16
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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18780..21809
DNA (3030bp) protein (1010aa)
Type I restriction-modification system restriction subunit n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSM2_TISMK
Type I restriction-modification system restriction subunit {ECO:0000313|EMBL:AFK55760.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
hsdR; type I restriction-modification system restriction subunit
scnpilot_p_inoc_scaffold_62_curated_17
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

21799..23142
DNA (1344bp) protein (448aa)
restriction modification system DNA specificity subunit; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Restriction modification system DNA specificity domain n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMN0_OPITP
Restriction modification system DNA specificity domain {ECO:0000313|EMBL:ACB74375.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
scnpilot_p_inoc_scaffold_62_curated_18
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23139..24362
DNA (1224bp) protein (408aa)
Anticodon nuclease n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSM4_TISMK
prrC; anticodon nuclease
Anticodon nuclease {ECO:0000313|EMBL:AFK55762.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
scnpilot_p_inoc_scaffold_62_curated_19
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24359..25978
DNA (1620bp) protein (540aa)
Type I restriction-modification system, M subunit n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSM5_TISMK
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KKB76809.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
type I restriction-modification system, M subunit
scnpilot_p_inoc_scaffold_62_curated_20
unknown

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comp(26039..26830)
DNA (792bp) protein (264aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_62_curated_21
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27010..28200)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036FCE60
filamentation induced by cAMP protein fic
Filamentation induced by cAMP protein Fic {ECO:0000313|EMBL:ACB24517.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
scnpilot_p_inoc_scaffold_62_curated_22
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28796..29800)
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D9429F
Uncharacterized protein {ECO:0000313|EMBL:BAI75295.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
scnpilot_p_inoc_scaffold_62_curated_23
unknown

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comp(30268..31062)
DNA (795bp) protein (265aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_62_curated_24
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

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comp(31067..32290)
DNA (1224bp) protein (408aa)
Integrase family protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8B2_GEOLS
integrase
Tax=CG_Solirubrobact_01
scnpilot_p_inoc_scaffold_62_curated_25
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32628..34451
DNA (1824bp) protein (608aa)
Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U336_9PROT
Putative uncharacterized protein {ECO:0000313|EMBL:CAM77293.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
integrase family protein
scnpilot_p_inoc_scaffold_62_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34515..35168
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VMV6_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC74656.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
scnpilot_p_inoc_scaffold_62_curated_27
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(35141..35506)
DNA (366bp) protein (122aa)
Transcriptional regulator n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P6T6_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:AIB13013.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
transcriptional regulator
scnpilot_p_inoc_scaffold_62_curated_28
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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35650..36270
DNA (621bp) protein (207aa)
Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7C3W6_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
scnpilot_p_inoc_scaffold_62_curated_29
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36267..37217
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5S9N9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KAI93741.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
scnpilot_p_inoc_scaffold_62_curated_30
unknown

Not on your lists

37236..37568
DNA (333bp) protein (111aa)

This feature has no annotations

Displaying items 1-30 of 271 in total

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