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scnpilot_p_inoc_scaffold_20_curated

Search features with annotation key words

Displaying items 31-60 of 344 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_20_curated_31
unknown

Not on your lists

comp(41457..44288)
DNA (2832bp) protein (944aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_20_curated_32
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

44577..45608
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CAG:246 RepID=R5DPZ2_9PORP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX78016.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
scnpilot_p_inoc_scaffold_20_curated_33
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45661..48549)
DNA (2889bp) protein (963aa)
D-lactate dehydrogenase (Cytochrome) id=4128438 bin=GWF2_Bacteroidetes_38_335 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
D-lactate dehydrogenase; K06911
Tax=GWF2_Bacteroidetes_38_335_curated
scnpilot_p_inoc_scaffold_20_curated_34
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(48562..49257)
DNA (696bp) protein (232aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z6_PALPW
had superfamily (subfamily ia) hydrolase, tigr02254; K07025 putative hydrolase of the HAD superfamily
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_35
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(49260..50192)
DNA (933bp) protein (311aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z5_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80489.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_36
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(50217..50885)
DNA (669bp) protein (223aa)
uroporphyriN-iii c/tetrapyrrole (corrin/porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z4_PALPW
scnpilot_p_inoc_scaffold_20_curated_37
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(50895..51830)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Parabacteroides johnsonii CL02T12C29 RepID=K5ZEK6_9PORP
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_38
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

51969..52550
DNA (582bp) protein (194aa)
thymidine kinase (EC:2.7.1.21); K00857 thymidine kinase [EC:2.7.1.21]
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Thymidine kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z3_PALPW
scnpilot_p_inoc_scaffold_20_curated_39
GWB2_Bacteroidetes_41_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

52677..54176
DNA (1500bp) protein (500aa)
Amino acid/peptide transporter n=1 Tax=Alistipes sp. CAG:53 RepID=R5W7R7_9BACT
putative H+/peptide symporter; K03305 proton-dependent oligopeptide transporter, POT family
Tax=GWB2_Bacteroidetes_41_8_curated
scnpilot_p_inoc_scaffold_20_curated_40
Bacteroides reticulotermitis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54169..54582)
DNA (414bp) protein (138aa)
protein-tyrosine-phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48]
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Bacteroides pyogenes F0041 RepID=U2DYS1_9BACE
Low molecular weight protein tyrosine phosphatase {ECO:0000313|EMBL:GAE82849.1}; TaxID=1445607 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides reticulotermitis JCM 10512.;"
scnpilot_p_inoc_scaffold_20_curated_41
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(54648..55787)
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6Z2_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80486.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_42
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(55801..56538)
DNA (738bp) protein (246aa)
shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase {ECO:0000313|EMBL:ADQ80930.1}; EC=1.1.1.25 {ECO:0000313|EMBL:ADQ80930.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Shikimate dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T886_PALPW
scnpilot_p_inoc_scaffold_20_curated_43
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(56535..57245)
DNA (711bp) protein (237aa)
DedA family protein n=1 Tax=Fibrobacter succinogenes (strain ATCC 19169 / S85) RepID=C9RK64_FIBSS
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_44
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(57271..58641)
DNA (1371bp) protein (457aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T888_PALPW
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:ADQ80932.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_45
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

58818..59342
DNA (525bp) protein (175aa)
Hydrolase NUDIX family n=1 Tax=Bacteroides sp. CAG:714 RepID=R6ZS35_9BACE
nudix hydrolase
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_46
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

59349..62381
DNA (3033bp) protein (1011aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T890_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_47
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

62398..64062
DNA (1665bp) protein (555aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T891_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80935.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_48
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(64049..67156)
DNA (3108bp) protein (1036aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
glycoside hydrolase; K01190 beta-galactosidase [EC:3.2.1.23]
Beta-galactosidase n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FNW9_9FLAO
scnpilot_p_inoc_scaffold_20_curated_49
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(67175..68131)
DNA (957bp) protein (319aa)
beta-xylosidase n=1 Tax=Streptomyces chartreusis RepID=UPI000262E7DA
Beta-xylosidase {ECO:0000313|EMBL:KDN79039.1}; TaxID=358823 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
Ricin B lectin
scnpilot_p_inoc_scaffold_20_curated_50
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(68175..71243)
DNA (3069bp) protein (1023aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI0003793CD0
Glycoside hydrolase {ECO:0000313|EMBL:KGO94639.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
glycoside hydrolase
scnpilot_p_inoc_scaffold_20_curated_51
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

71656..74388
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Bacteroides salyersiae CL02T12C01 RepID=I8Z8R0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:GAO30828.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
fibronectin type III domain-containing protein
scnpilot_p_inoc_scaffold_20_curated_52
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

74409..76982
DNA (2574bp) protein (858aa)
Uncharacterized protein n=1 Tax=Paraprevotella xylaniphila YIT 11841 RepID=F3QSV8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAO30830.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
hypothetical protein
scnpilot_p_inoc_scaffold_20_curated_53
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

76996..80289
DNA (3294bp) protein (1098aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6R9D8_9BACE
TonB-dependent receptor {ECO:0000313|EMBL:GAO30831.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
TonB-linked outer membrane protein, SusC/RagA family
scnpilot_p_inoc_scaffold_20_curated_54
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

80305..81927
DNA (1623bp) protein (541aa)
Uncharacterized protein n=1 Tax=Tannerella sp. CAG:118 RepID=R5I7J9_9PORP
Outer membrane protein {ECO:0000313|EMBL:GAO30832.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
RagB/SusD family protein
scnpilot_p_inoc_scaffold_20_curated_55
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

81952..83886
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. HPS0048 RepID=U6RD04_9BACE
Transforming growth factor-beta induced protein IG-H3 {ECO:0000313|EMBL:GAO30833.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
secreted/surface protein with fasciclin-like repeats
scnpilot_p_inoc_scaffold_20_curated_56
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

83906..85498
DNA (1593bp) protein (531aa)
Fasciclin domain protein n=1 Tax=Paraprevotella xylaniphila YIT 11841 RepID=F3QWC3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAO30834.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
hypothetical protein
scnpilot_p_inoc_scaffold_20_curated_57
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

85518..88694
DNA (3177bp) protein (1059aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides nordii CL02T12C05 RepID=I9RQ41_9BACE
TonB-dependent receptor {ECO:0000313|EMBL:GAO30835.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
outer membrane cobalamin receptor protein
scnpilot_p_inoc_scaffold_20_curated_58
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

88720..90336
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NG10_9BACT
Uncharacterized protein {ECO:0000313|EMBL:GAO30836.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
RagB/SusD family protein
scnpilot_p_inoc_scaffold_20_curated_59
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

90405..92321
DNA (1917bp) protein (639aa)
hypothetical protein n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B696A9
Uncharacterized protein {ECO:0000313|EMBL:KDN55496.1}; TaxID=1492738 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
hypothetical protein rbh
scnpilot_p_inoc_scaffold_20_curated_60
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(92439..96479)
DNA (4041bp) protein (1347aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T0V7_PALPW
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:ADQ78232.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
integral membrane sensor hybrid histidine kinase
Displaying items 31-60 of 344 in total

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