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scnpilot_p_inoc_scaffold_20_curated

Search features with annotation key words

Displaying items 181-210 of 344 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_20_curated_181
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(257763..259676)
DNA (1914bp) protein (638aa)
Chaperone protein DnaK n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T825_PALPW
chaperone protein dnak; K04043 molecular chaperone DnaK
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_182
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(259936..260406)
DNA (471bp) protein (157aa)
enoyL-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T490_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_183
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

260570..261277
DNA (708bp) protein (236aa)
uridylate kinase (EC:2.7.4.22); K09903 uridylate kinase [EC:2.7.4.22]
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Uridylate kinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C5_PALPW
scnpilot_p_inoc_scaffold_20_curated_184
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

261301..261861
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7C6_PALPW
ribosome recycling factor; K02838 ribosome recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_185
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(261896..262945)
DNA (1050bp) protein (350aa)
s-adenosylmethionine/tRNA-ribosyltransferase isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U4_PALPW
scnpilot_p_inoc_scaffold_20_curated_186
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(262961..263686)
DNA (726bp) protein (242aa)
tRNA pseudouridine synthase b (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U5_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_187
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(263691..264485)
DNA (795bp) protein (265aa)
undecaprenyL-diphosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Undecaprenyl-diphosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U6_PALPW
scnpilot_p_inoc_scaffold_20_curated_188
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(264482..264709)
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U7_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79391.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_189
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(264730..265608)
DNA (879bp) protein (293aa)
Cell division protein FtsX n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U8_PALPW
hypothetical protein; K09811 cell division transport system permease protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_190
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(265615..268110)
DNA (2496bp) protein (832aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3U9_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79393.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_191
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

268269..269495
DNA (1227bp) protein (409aa)
cysteine desulfurase, sufs subfamily (EC:4.4.1.16); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
Cysteine desulfurase {ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|SAAS:SAAS00062216};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Cysteine desulfurase, SufS subfamily n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3V0_PALPW
scnpilot_p_inoc_scaffold_20_curated_192
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

269510..269932
DNA (423bp) protein (141aa)
Uncharacterized protein n=3 Tax=Porphyromonadaceae RepID=R7DGC7_9PORP
Cysteine desulfuration protein SufE
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_193
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

269901..272399
DNA (2499bp) protein (833aa)
alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
Alanine racemase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1V0_PALPW
Alanine racemase {ECO:0000313|EMBL:ADQ78694.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_194
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(272480..274228)
DNA (1749bp) protein (583aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain i; K01840 phosphomannomutase [EC:5.4.2.8]
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R2_PALPW
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:ADQ79006.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_195
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

274424..276928
DNA (2505bp) protein (835aa)
ATPase AAA-2 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2R0_PALPW
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC
ATPase AAA-2 domain protein {ECO:0000313|EMBL:ADQ79004.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_196
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(276987..277565)
DNA (579bp) protein (193aa)
Maf-like protein Palpr_0544 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T1V9_PALPW
maf protein; K06287 septum formation protein
Maf-like protein Palpr_0544 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_20_curated_197
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(277580..278539)
DNA (960bp) protein (320aa)
ubia prenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
prenyltransferase id=1856712 bin=GWD2_Bacteroidetes_33_33 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_198
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

278746..279570
DNA (825bp) protein (275aa)
Polysaccharide export protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T133_PALPW
polysaccharide export protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_199
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

279574..280332
DNA (759bp) protein (253aa)
Polysaccharide export protein, BexD/CtrA/VexA family protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T132_PALPW
polysaccharide export protein, bexd/ctra/vexa family protein; K01991 polysaccharide export outer membrane protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_200
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

280337..282787
DNA (2451bp) protein (817aa)
capsular exopolysaccharide family protein (EC:2.7.10.2)
Capsular exopolysaccharide family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T131_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_201
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

282800..284140
DNA (1341bp) protein (447aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ADQ78409.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ADQ78409.1};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Nucleotide sugar dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T128_PALPW
scnpilot_p_inoc_scaffold_20_curated_202
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(284142..284651)
DNA (510bp) protein (170aa)
Uncharacterized protein n=3 Tax=Porphyromonadaceae RepID=R7DHP3_9PORP
NTP pyrophosphohydrolase {ECO:0000313|EMBL:ERM90006.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
NTP pyrophosphohydrolase
scnpilot_p_inoc_scaffold_20_curated_203
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

284802..287201
DNA (2400bp) protein (800aa)
Soluble ligand binding domain n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T333_PALPW
soluble ligand binding domain
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_204
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

287211..288308
DNA (1098bp) protein (366aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T332_PALPW
lipopolysaccharide biosynthesis protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_20_curated_205
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

288312..289748
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Bacteroides xylanisolvens CL03T12C04 RepID=I9UUZ8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY86458.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
polysaccharide biosynthesis protein
scnpilot_p_inoc_scaffold_20_curated_206
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

289754..291184
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Bacteroides xylanisolvens CL03T12C04 RepID=I9AGH6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY86457.1}; TaxID=997892 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens CL03T12C04.;"
scnpilot_p_inoc_scaffold_20_curated_207
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

291181..292353
DNA (1173bp) protein (391aa)
hypothetical protein BfaeM_13742 id=2005876 bin=GWE2_Firmicute_51_13 species=Bacteroides faecis genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
hypothetical protein
Tax=GWF2_Firmicutes_51_9_curated
scnpilot_p_inoc_scaffold_20_curated_208
Bacteroides finegoldii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

292350..293540
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Bacteroides finegoldii CL09T03C10 RepID=K5CG74_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EKJ92594.1}; TaxID=997888 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides finegoldii CL09T03C10.;"
group 1 glycosyl transferase
scnpilot_p_inoc_scaffold_20_curated_209
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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293548..294717
DNA (1170bp) protein (390aa)
Glycosyl transferase group 1 {ECO:0000313|EMBL:CEN21861.1}; EC=2.4.1.57 {ECO:0000313|EMBL:CEN21861.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
Uncharacterized protein n=2 Tax=Bacteroides RepID=K1GCE3_BACFG
Glycosyltransferase
scnpilot_p_inoc_scaffold_20_curated_210
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

294744..295889
DNA (1146bp) protein (382aa)
Putitive LPS biosynthesis protein id=4226018 bin=GWA2_Flavobacterium_35_26 species=Vibrio vulnificus genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Flavobacterium_35_26 organism_group=Bacteroidetes organism_desc=Good+ six scaffolds
putitive LPS biosynthesis protein rbh
Tax=BJP_08E140C01_Bacteroidetes_41_49
Displaying items 181-210 of 344 in total

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