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scnpilot_p_inoc_scaffold_28_curated

Search features with annotation key words

Displaying items 151-180 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_28_curated_151
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

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190521..193898
DNA (3378bp) protein (1126aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF34141.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
Spore coat protein CotH id=4408774 bin=GWF2_Bacteroidetes_49_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
scnpilot_p_inoc_scaffold_28_curated_152
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

194018..197395
DNA (3378bp) protein (1126aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF34141.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
Spore coat protein CotH id=4408774 bin=GWF2_Bacteroidetes_49_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
scnpilot_p_inoc_scaffold_28_curated_153
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(197398..198834)
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8G4_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_154
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(198835..199539)
DNA (705bp) protein (235aa)
PorT protein n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JCQ7_9BACT
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_155
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(199642..201117)
DNA (1476bp) protein (492aa)
Rhamnulokinase {ECO:0000256|HAMAP-Rule:MF_01535}; Short=RhaB {ECO:0000256|HAMAP-Rule:MF_01535};; EC=2.7.1.5 {ECO:0000256|HAMAP-Rule:MF_01535};; ATP:L-rhamnulose phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01535}; L-rhamnulose 1-kinase {ECO:0000256|HAMAP-Rule:MF_01535}; Rhamnulose kinase {ECO:0000256|HAMAP-Rule:MF_01535}; TaxID=411476 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC; 11153)
L-rhamnulokinase (EC:2.7.1.51 2.7.1.5)
Rhamnulokinase n=2 Tax=Bacteroides ovatus RepID=A7M0H2_BACOV
scnpilot_p_inoc_scaffold_28_curated_156
unknown

Not on your lists

201326..201481
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_28_curated_157
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(201540..202637)
DNA (1098bp) protein (366aa)
UspA domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8G2_PALPW
uspa domaiN-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:ADQ81006.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_158
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

202762..204093
DNA (1332bp) protein (444aa)
Gliding motility-associated protein GldE n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8G0_PALPW
gliding motility-associated protein glde
Gliding motility-associated protein GldE {ECO:0000313|EMBL:ADQ81004.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_159
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

204090..204704
DNA (615bp) protein (205aa)
4'-phosphopantetheinyl transferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F8_PALPW
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:ADQ81002.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_160
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

204788..205582
DNA (795bp) protein (265aa)
geranylgeranylglyceryl phosphate synthase; K07094 putative glycerol-1-phosphate prenyltransferase [EC:2.5.1.-]
Geranylgeranylglyceryl phosphate synthase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F7_PALPW
Geranylgeranylglyceryl phosphate synthase {ECO:0000313|EMBL:ADQ81001.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_161
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(205584..206780)
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL03T12C32 RepID=K5YGV6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN12827.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
transmembrane transport protein
scnpilot_p_inoc_scaffold_28_curated_162
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(206782..207579)
DNA (798bp) protein (266aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Inositol monophosphatase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F5_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_163
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(207701..208825)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035F8D2E
hypothetical protein
Methicillin Resistance Protein {ECO:0000313|EMBL:AGY53320.1}; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
scnpilot_p_inoc_scaffold_28_curated_164
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(208892..211570)
DNA (2679bp) protein (893aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
valyL-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9]
Valine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8F3_PALPW
scnpilot_p_inoc_scaffold_28_curated_165
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

211586..212002
DNA (417bp) protein (139aa)
Endoribonuclease L-PSP n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J1Z2_9PORP
Endoribonuclease L-PSP {ECO:0000313|EMBL:EGK00248.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
endoribonuclease L-PSP; K07567 TdcF protein
scnpilot_p_inoc_scaffold_28_curated_166
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(212064..212549)
DNA (486bp) protein (162aa)
Single-stranded DNA-binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8K4_PALPW
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_167
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(212751..215195)
DNA (2445bp) protein (815aa)
ATP-dependent protease la (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease id=4674549 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_28_curated_168
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

215450..216586
DNA (1137bp) protein (379aa)
Putative uncharacterized protein id=4674547 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
hypothetical protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_28_curated_169
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

216601..217506
DNA (906bp) protein (302aa)
hypothetical protein
Putative uncharacterized protein id=4674545 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_28_curated_170
BJP_IG2102_Cloacimonetes_48_20, Cloacimonetes, Bacteria

Not on your lists

comp(217559..219982)
DNA (2424bp) protein (808aa)
CHU large protein uncharacterized n=1 Tax=Kordia algicida OT-1 RepID=A9DKX1_9FLAO
hypothetical protein
Tax=BJP_IG2102_Cloacimonetes_48_20
scnpilot_p_inoc_scaffold_28_curated_171
BJP_IG2102_Cloacimonetes_48_20, Cloacimonetes, Bacteria

Not on your lists

comp(220073..221635)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=candidate division WWE1 bacterium JGI 0000039-L21 RepID=UPI000375635C
hypothetical protein
Tax=BJP_IG2102_Cloacimonetes_48_20
scnpilot_p_inoc_scaffold_28_curated_172
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

222045..223436
DNA (1392bp) protein (464aa)
orn/dap/arg decarboxylase 2; K01585 arginine decarboxylase [EC:4.1.1.19]
Orn/DAP/Arg decarboxylase 2 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8D5_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_173
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(223425..224564)
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8D4_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80978.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_174
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(224577..225407)
DNA (831bp) protein (277aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8D3_PALPW
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:ADQ80977.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_175
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(225438..226094)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NXT2_9SPHI
hypothetical protein; K00782 hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_176
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(226057..228147)
DNA (2091bp) protein (697aa)
ATP-dependent metalloprotease ftsh (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8D1_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_177
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(228156..228536)
DNA (381bp) protein (127aa)
Ribosomal silencing factor RsfS n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8D0_PALPW
iojap family protein; K09710 ribosome-associated protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_178
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(228766..230472)
DNA (1707bp) protein (569aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8C9_PALPW
hypothetical protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:ADQ80973.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_179
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(230595..232082)
DNA (1488bp) protein (496aa)
peptidase m50; K11749 regulator of sigma E protease [EC:3.4.24.-]
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Peptidase M50 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8C6_PALPW
scnpilot_p_inoc_scaffold_28_curated_180
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(232086..233258)
DNA (1173bp) protein (391aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae;
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8C4_PALPW
Displaying items 151-180 of 338 in total

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