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scnpilot_p_inoc_scaffold_28_curated

Search features with annotation key words

Displaying items 241-270 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_28_curated_241
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(295717..295905)
DNA (189bp) protein (63aa)
50S ribosomal protein L33 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3M7_PALPW
ribosomal protein l33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_242
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(295924..296163)
DNA (240bp) protein (80aa)
50S ribosomal protein L28 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3M8_PALPW
LSU ribosomal protein l28p; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_243
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(296312..297571)
DNA (1260bp) protein (420aa)
CinA-like protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3M9_PALPW
competence/damage-inducible protein cina; K03742 competence/damage-inducible protein CinA
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_244
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(297540..298145)
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3N0_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79324.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_245
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(298212..298562)
DNA (351bp) protein (117aa)
Protein translocase subunit secG n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3N2_PALPW
protein translocase subunit secg; K03075 preprotein translocase subunit SecG
Protein translocase subunit secG {ECO:0000313|EMBL:ADQ79326.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_246
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(298575..299162)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3N3_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79327.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_247
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(299169..299690)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3N4_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ79328.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_248
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(299677..300927)
DNA (1251bp) protein (417aa)
Transcriptional regulator n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3N5_PALPW
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ADQ79329.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_249
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(300943..301122)
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7Y5_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80829.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_250
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(301135..301908)
DNA (774bp) protein (258aa)
prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase {ECO:0000313|EMBL:ADQ80830.1}; EC=1.3.1.12 {ECO:0000313|EMBL:ADQ80830.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Prephenate dehydrogenase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7Y6_PALPW
scnpilot_p_inoc_scaffold_28_curated_251
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(301984..303261)
DNA (1278bp) protein (426aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036CAB2C
beta-lactamase induction signal transducer; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_252
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(303236..304537)
DNA (1302bp) protein (434aa)
SpoIID/LytB domain protein n=1 Tax=Bacteroides sp. CAG:20 RepID=R5EP80_9BACE
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_28_curated_253
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(304534..305439)
DNA (906bp) protein (302aa)
Putative glycosyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T7Z1_PALPW
glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:ADQ80835.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_254
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(305436..306008)
DNA (573bp) protein (191aa)
Exosortase EpsH-related protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8I6_PALPW
exosortase epsh-related protein
Exosortase EpsH-related protein {ECO:0000313|EMBL:ADQ81030.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_255
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(306011..307039)
DNA (1029bp) protein (343aa)
O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57]
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroid
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8I7_PALPW
scnpilot_p_inoc_scaffold_28_curated_256
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

307403..311599
DNA (4197bp) protein (1399aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8I8_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ81032.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_257
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(311765..312022)
DNA (258bp) protein (86aa)
50S ribosomal protein L31 type B n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T8J0_PALPW
LSU ribosomal protein l31p; K02909 large subunit ribosomal protein L31
50S ribosomal protein L31 type B {ECO:0000256|HAMAP-Rule:MF_00502, ECO:0000256|SAAS:SAAS00004504}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_28_curated_258
Bacteroides sp. CAG:702, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(312102..312845)
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262747 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:702.;"
tRNA pseudouridine synthase a; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
tRNA pseudouridine synthase A n=1 Tax=Bacteroides sp. CAG:702 RepID=R5TWC6_9BACE
scnpilot_p_inoc_scaffold_28_curated_259
GWF2_Bacteroidetes_40_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

312893..314362
DNA (1470bp) protein (490aa)
glycosyl hydrolase family 109 protein (EC:3.2.1.49)
glycosyl hydrolase family 109 n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029AC9BD
Tax=GWF2_Bacteroidetes_40_14_curated
scnpilot_p_inoc_scaffold_28_curated_260
unknown

Not on your lists

314376..314633
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_28_curated_261
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(314511..315428)
DNA (918bp) protein (306aa)
dihydrodipicolinate synthetase family; K01639 N-acetylneuraminate lyase [EC:4.1.3.3]
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5ZG72_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10421.1}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
scnpilot_p_inoc_scaffold_28_curated_262
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(315502..317745)
DNA (2244bp) protein (748aa)
Putative alpha-1,2-mannosidase n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JQZ5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOA54900.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
hypothetical protein rbh
scnpilot_p_inoc_scaffold_28_curated_263
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(317799..319775)
DNA (1977bp) protein (659aa)
beta-hexosaminidase; K12373 hexosaminidase [EC:3.2.1.52] rbh
Putative uncharacterized protein n=1 Tax=Bacteroides ovatus 3_8_47FAA RepID=F7LHD1_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EGM98527.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
scnpilot_p_inoc_scaffold_28_curated_264
Bacteroides fluxus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(319777..323097)
DNA (3321bp) protein (1107aa)
Putative alpha-1,2-mannosidase n=1 Tax=Bacteroides fluxus YIT 12057 RepID=F3PXR5_9BACE
Putative alpha-1,2-mannosidase {ECO:0000313|EMBL:EGF51647.1}; TaxID=763034 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fluxus YIT 12057.;"
alpha-1,2-mannosidase rbh
scnpilot_p_inoc_scaffold_28_curated_265
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(323110..325422)
DNA (2313bp) protein (771aa)
beta-N-acetylhexosaminidase; K12373 hexosaminidase [EC:3.2.1.52]
Glycosyl hydrolase family 20, catalytic domain protein n=2 Tax=Bacteroides caccae RepID=A5ZDX5_9BACE
Glycosyl hydrolase family 20, catalytic domain protein {ECO:0000313|EMBL:EDM22694.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
scnpilot_p_inoc_scaffold_28_curated_266
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(325436..328000)
DNA (2565bp) protein (855aa)
bmnA; beta-mannosidase; K01192 beta-mannosidase [EC:3.2.1.25]
Uncharacterized protein n=1 Tax=Bacteroides fragilis HMW 616 RepID=K1FUR4_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EKA81352.1}; TaxID=1073388 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis HMW 616.;"
scnpilot_p_inoc_scaffold_28_curated_267
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(328136..329707)
DNA (1572bp) protein (524aa)
SusD family protein n=1 Tax=Bacteroides sp. 2_1_16 RepID=D1JL14_9BACE
hypothetical protein
Starch-binding associating with outer membrane family protein {ECO:0000313|EMBL:EXZ45079.1}; TaxID=1339280 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. 2-F-2 #4.;"
scnpilot_p_inoc_scaffold_28_curated_268
Bacteroides fragilis CAG:558, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(329729..333103)
DNA (3375bp) protein (1125aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis CAG:558 RepID=R5S790_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ40932.1}; TaxID=1263047 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:558.;"
putative outer membrane protein
scnpilot_p_inoc_scaffold_28_curated_269
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(333139..334434)
DNA (1296bp) protein (432aa)
Uncharacterized protein n=2 Tax=Bacteroides fragilis RepID=I3HMN8_BACFG
Uncharacterized protein {ECO:0000313|EMBL:EIY92945.1}; TaxID=997883 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis CL07T12C05.;"
hypothetical protein
scnpilot_p_inoc_scaffold_28_curated_270
RBG_13_Bacteroidetes_46_8_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(334706..335233)
DNA (528bp) protein (176aa)
outer membrane lipoprotein Blc n=1 Tax=Pedobacter agri RepID=UPI000299FD84
hypothetical protein
Tax=RBG_13_Bacteroidetes_46_8_curated
Displaying items 241-270 of 338 in total

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