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scnpilot_p_inoc_scaffold_21_curated

Search features with annotation key words

Displaying items 151-180 of 379 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_21_curated_151
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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188142..188483
DNA (342bp) protein (114aa)
Type I site-specific deoxyribonuclease, HsdR family {ECO:0000313|EMBL:EEI90855.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EEI90855.1};; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
type I site-specific deoxyribonuclease, HsdR family; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G1E6_9SPHI
scnpilot_p_inoc_scaffold_21_curated_152

Not on your lists

188480..189433
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AH82_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD55608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
HsdR family type I site-specific deoxyribonuclease
scnpilot_p_inoc_scaffold_21_curated_153
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

189437..189862
DNA (426bp) protein (142aa)
type I site-specific deoxyribonuclease HsdR family; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AH82_9BACT
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
scnpilot_p_inoc_scaffold_21_curated_154
Candidatus Omnitrophus sp. SKK-01, Candidatus Omnitrophus, Omnitrophica, Bacteria

Not on your lists

189939..191132
DNA (1194bp) protein (398aa)
type I site-specific deoxyribonuclease, HsdR family (EC:3.1.21.3); K01153 type I restriction enzyme, R subunit [EC:3.1.21.3]
Type I site-specific deoxyribonuclease, HsdR family n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BY84_NITHN
Restriction endonuclease subunit R {ECO:0000313|EMBL:KJJ85520.1}; TaxID=1609969 species="Bacteria; Omnitrophica; Candidatus Omnitrophus.;" source="Candidatus Omnitrophus sp. SKK-01.;"
scnpilot_p_inoc_scaffold_21_curated_155
unknown

Not on your lists

191165..191356
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_21_curated_156
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(191839..192036)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E4_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_157
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(192129..193928)
DNA (1800bp) protein (600aa)
amp-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-dependent synthetase and ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E5_PALPW
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADQ80289.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_158
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(193973..194743)
DNA (771bp) protein (257aa)
ribonuclease iii (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribonuclease 3 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E6_PALPW
scnpilot_p_inoc_scaffold_21_curated_159
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(194745..196007)
DNA (1263bp) protein (421aa)
3-oxoacyL-(acyL-carrier-protein) synthase ii (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E7_PALPW
scnpilot_p_inoc_scaffold_21_curated_160
Paraprevotella xylaniphila, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(196029..196259)
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6E8_PALPW
acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=762982 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevotella xylaniphila YIT 11841.;"
scnpilot_p_inoc_scaffold_21_curated_161
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

196409..196978
DNA (570bp) protein (190aa)
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00035DA064
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_162
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

197058..198158
DNA (1101bp) protein (367aa)
Ribosome-binding ATPase YchF n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6F0_PALPW
GTP-binding protein ychf; K06942
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_163
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

198488..202291
DNA (3804bp) protein (1268aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T6G6_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_164
unknown

Not on your lists

202297..202986
DNA (690bp) protein (230aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_21_curated_165
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(202983..204068)
DNA (1086bp) protein (362aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T773_PALPW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ80567.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_166
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(204093..206423)
DNA (2331bp) protein (777aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
DNA topoisomerase i (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2]
DNA topoisomerase 1 n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T772_PALPW
scnpilot_p_inoc_scaffold_21_curated_167
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(206667..209480)
DNA (2814bp) protein (938aa)
peptidase m16 domain protein; K07263 zinc protease [EC:3.4.24.-]
Peptidase M16 domain protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T739_PALPW
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_168
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

209577..210116
DNA (540bp) protein (180aa)
GAF domain-containing protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T740_PALPW
gaf domaiN-containing protein; K07170 GAF domain-containing protein
GAF domain-containing protein {ECO:0000313|EMBL:ADQ80534.1}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_21_curated_169
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(210120..212222)
DNA (2103bp) protein (701aa)
TonB-dependent receptor plug id=4274671 bin=GWF2_Bacteroidetes_49_14 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_21_curated_170
GWF2_Bacteroidetes_49_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

212326..213972
DNA (1647bp) protein (549aa)
Peptidase U34 dipeptidase id=4274669 bin=GWF2_Bacteroidetes_49_14 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_49_14 organism_group=Bacteroidetes organism_desc=Good (not ab)
peptidase u34 dipeptidase
Tax=GWF2_Bacteroidetes_49_14_curated
scnpilot_p_inoc_scaffold_21_curated_171
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

214068..215588
DNA (1521bp) protein (507aa)
gmp synthase (glutamine-hydrolyzing) (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T4Q4_PALPW
scnpilot_p_inoc_scaffold_21_curated_172
Bacteroides stercoris CAG:120, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

215593..216444
DNA (852bp) protein (284aa)
hypothetical protein; K03424 TatD DNase family protein [EC:3.1.21.-]
Hydrolase TatD family n=1 Tax=Bacteroides stercoris CAG:120 RepID=R6A3Z2_9BACE
Hydrolase TatD family {ECO:0000313|EMBL:CDA46543.1}; TaxID=1263053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides stercoris CAG:120.;"
scnpilot_p_inoc_scaffold_21_curated_173
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

216720..217499
DNA (780bp) protein (260aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=1 Tax=Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2) RepID=B5D1B7_BACPM
biopolymer transport protein; K03561 biopolymer transport protein ExbB
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_174
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

217508..217981
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bacteroides clarus CAG:160 RepID=R6L2I7_9BACE
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_175
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

218009..218590
DNA (582bp) protein (194aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7ADD6_9PORP
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_176
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

218590..219060
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8XLG8_9BACE
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_21_curated_177
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


219295..222729
DNA (3435bp) protein (1145aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
isoleucyL-tRNA synthetase (EC:6.1.1.5); K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5]
Isoleucine--tRNA ligase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T522_PALPW
scnpilot_p_inoc_scaffold_21_curated_178
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

222837..225050
DNA (2214bp) protein (738aa)
LamG domain protein jellyroll fold domain protein n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PN11_MURRD
LamG domain-containing protein jellyroll fold domain-containing protein
LamG domain protein jellyroll fold domain protein {ECO:0000313|EMBL:AEM72359.1}; Flags: Precursor;; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1).;"
scnpilot_p_inoc_scaffold_21_curated_179
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

225151..228651
DNA (3501bp) protein (1167aa)
Uncharacterized protein id=2103845 bin=GWD2_Bacteroidetes_40_43 species=Bacteroides nordii genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
alpha-N-acetylglucosaminidase
Tax=GWE2_Bacteroidetes_40_63_curated
scnpilot_p_inoc_scaffold_21_curated_180
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

229019..233332
DNA (4314bp) protein (1438aa)
Uncharacterized protein n=1 Tax=Alloprevotella rava F0323 RepID=G5GD37_9BACT
Tax=CG_Paludi_01
Displaying items 151-180 of 379 in total

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