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scnpilot_p_inoc_scaffold_29_curated

Search features with annotation key words

Displaying items 241-270 of 330 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_29_curated_241
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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313036..313983
DNA (948bp) protein (316aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:ADQ79046.1}; EC=2.7.6.1 {ECO:0000313|EMBL:ADQ79046.1};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T2V2_PALPW
scnpilot_p_inoc_scaffold_29_curated_242
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(314093..314989)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2DAI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI93800.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_243
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(315009..317015)
DNA (2007bp) protein (669aa)
OPT family oligopeptide transporter n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5IUM6_9PORP
peptide transporter
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_244
GWE2_Bacteroidetes_29_8_curated, Bacteroidetes, Bacteria

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317509..318207
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 335 str. F0486 RepID=J0MSD3_9FLAO
hypothetical protein
Tax=GWE2_Bacteroidetes_29_8_curated
scnpilot_p_inoc_scaffold_29_curated_245
GWA2_Bacteroidetes_30_7_curated, Bacteroidia, Bacteroidetes, Bacteria

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318464..319390
DNA (927bp) protein (309aa)
PKD domain containing protein id=2017567 bin=GWD2_Bacteroidetes_33_33 species=Methanoregula boonei genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
RSp0476; RHS-related transmembrane protein
Tax=GWA2_Bacteroidetes_30_7_curated
scnpilot_p_inoc_scaffold_29_curated_246
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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319728..320294
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=4224411 bin=GWF2_Bacteroidetes_33_38 species=Flavobacterium johnsoniae genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein
Tax=GWF2_Bacteroidetes_33_38_curated
scnpilot_p_inoc_scaffold_29_curated_247
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

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320305..321813
DNA (1509bp) protein (503aa)
Band 7 protein id=4224414 bin=GWF2_Bacteroidetes_33_38 species=Flavobacterium johnsoniae genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_38 organism_group=Bacteroidetes organism_desc=a699
hypothetical protein; K07192 flotillin
Tax=GWF2_Bacteroidetes_33_38_curated
scnpilot_p_inoc_scaffold_29_curated_248
Prevotella sp. CAG:1058, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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321896..324070
DNA (2175bp) protein (725aa)
Fibronectin type III domain protein n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CLJ2_9BACT
Fibronectin type III domain protein {ECO:0000313|EMBL:CCX65642.1}; TaxID=1262918 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1058.;"
S-layer protein
scnpilot_p_inoc_scaffold_29_curated_249
Porphyromonas uenonis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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324579..325172
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=1 Tax=Porphyromonas asaccharolytica PR426713P-I RepID=E4KRL2_9PORP
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEK17177.1}; TaxID=596327 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas uenonis 60-3.;"
scnpilot_p_inoc_scaffold_29_curated_250
Porphyromonas asaccharolytica, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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325185..326567
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Porphyromonas levii RepID=UPI0003755A32
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AEE12946.1}; TaxID=879243 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI; 4198) (Bacteroides asaccharolyticus).;"
scnpilot_p_inoc_scaffold_29_curated_251
Porphyromonas asaccharolytica, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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326588..327640
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Porphyromonas levii RepID=UPI000381B0A0
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AEE12945.1}; TaxID=879243 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI; 4198) (Bacteroides asaccharolyticus).;"
scnpilot_p_inoc_scaffold_29_curated_252
Porphyromonas uenonis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

327655..330798
DNA (3144bp) protein (1048aa)
acriflavin resistance protein n=1 Tax=Porphyromonas levii RepID=UPI00035E1CC9
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:EEK17158.1}; TaxID=596327 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas uenonis 60-3.;"
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
scnpilot_p_inoc_scaffold_29_curated_253
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(330891..332117)
DNA (1227bp) protein (409aa)
Proteinase inhibitor I4 serpin n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T581_PALPW
proteinase inhibitor i4 serpin; K13963 serpin B
Proteinase inhibitor I4 serpin {ECO:0000313|EMBL:ADQ79875.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_254
Bacteroides coprosuis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

332290..332724
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Bacteroides coprosuis DSM 18011 RepID=F3ZTZ6_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EGJ71097.1}; Flags: Precursor;; TaxID=679937 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprosuis DSM 18011.;"
scnpilot_p_inoc_scaffold_29_curated_255
GWF2_Bacteroidetes_33_38_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

332772..335063
DNA (2292bp) protein (764aa)
Iron complex outermembrane recepter protein n=2 Tax=Parabacteroides RepID=N2AUF0_9PORP
TonB-dependent outer membrane receptor; K02014 iron complex outermembrane recepter protein
Tax=GWF2_Bacteroidetes_33_38_curated
scnpilot_p_inoc_scaffold_29_curated_256
Bacteroides massiliensis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

335144..336538
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Bacteroides massiliensis dnLKV3 RepID=R9I989_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EOS09965.1}; TaxID=1235788 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides massiliensis dnLKV3.;"
polygalacturonase
scnpilot_p_inoc_scaffold_29_curated_257
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(336799..338883)
DNA (2085bp) protein (695aa)
Putative uncharacterized protein id=3899480 bin=GWF2_Bacteroidetes_38_335 species=unidentified eubacterium SCB49 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
Tax=GWF2_Bacteroidetes_38_335_curated
scnpilot_p_inoc_scaffold_29_curated_258
unknown

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comp(338984..339112)
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_29_curated_259
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(339126..339797)
DNA (672bp) protein (224aa)
manganese/iron superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Superoxide dismutase n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T355_PALPW
scnpilot_p_inoc_scaffold_29_curated_260
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

339991..340587
DNA (597bp) protein (199aa)
holliday junction DNA helicase subunit ruva; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12]
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T354_PALPW
scnpilot_p_inoc_scaffold_29_curated_261
CG_Paludi_01, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

340591..348021
DNA (7431bp) protein (2477aa)
Putative uncharacterized protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T353_PALPW
hypothetical protein
Tax=CG_Paludi_01
scnpilot_p_inoc_scaffold_29_curated_262
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

348132..350144
DNA (2013bp) protein (671aa)
Putative thiol:disulfide interchange protein DsbD n=1 Tax=Parabacteroides sp. CAG:409 RepID=R7J9J9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ85406.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
thiol:disulfide interchange protein
scnpilot_p_inoc_scaffold_29_curated_263
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

350276..350851
DNA (576bp) protein (192aa)
Protein GrpE n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T351_PALPW
grpe protein; K03687 molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_264
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

350868..352016
DNA (1149bp) protein (383aa)
Chaperone protein DnaJ n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T350_PALPW
chaperone protein dnaj; K03686 molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_p_inoc_scaffold_29_curated_265
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

352077..352967
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Barnesiella intestinihominis YIT 11860 RepID=K0XC73_9PORP
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AHF12398.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
glycoside hydrolase
scnpilot_p_inoc_scaffold_29_curated_266
Bacteroides sp. CAG:633, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

352972..353262
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:633 RepID=R6FMH0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDB10166.1}; TaxID=1262744 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:633.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_267
Bacteroidetes oral taxon 274, Bacteroidetes, Bacteria

Not on your lists

353376..355811
DNA (2436bp) protein (812aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00037E9EA5
Outer membrane protein {ECO:0000313|EMBL:EFI16289.1}; TaxID=575590 species="Bacteria; Bacteroidetes.;" source="Bacteroidetes oral taxon 274 str. F0058.;"
hypothetical protein
scnpilot_p_inoc_scaffold_29_curated_268
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

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355823..356794
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI00036230EB
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_29_curated_269
Porphyromonadaceae bacterium ING2-E5B, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(356801..357550)
DNA (750bp) protein (250aa)
lipoyltransferase and lipoate-protein ligase (EC:2.7.7.63); K03800 lipoate-protein ligase A [EC:2.7.7.63]
Uncharacterized protein {ECO:0000313|EMBL:CEA16117.1}; TaxID=1562970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; unclassified Porphyromonadaceae.;" source="Porphyromonadaceae bacterium ING2-E5B.;"
Putative uncharacterized protein id=2021908 bin=GWD2_Bacteroidales_45_23 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
scnpilot_p_inoc_scaffold_29_curated_270
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(357558..358688)
DNA (1131bp) protein (377aa)
Periplasmic binding protein n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T3C5_PALPW
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ADQ79219.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
Displaying items 241-270 of 330 in total

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