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scnpilot_p_inoc_scaffold_1246_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1246_curated_1
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..594
DNA (594bp) protein (198aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1121439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5]
Chorismate synthase n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7T8V7_9DELT
scnpilot_p_inoc_scaffold_1246_curated_2
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1372..2661
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEF6_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA90681.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
scnpilot_p_inoc_scaffold_1246_curated_3
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2721..3248)
DNA (528bp) protein (176aa)
MarR family transcriptional regulator n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A2A46F
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ETC89308.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
MarR family transcriptional regulator
scnpilot_p_inoc_scaffold_1246_curated_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3341..4837)
DNA (1497bp) protein (499aa)
methylmalonate-semialdehyde dehydrogenase; K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKD4_XANP2
PutA protein {ECO:0000313|EMBL:BAQ44539.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
scnpilot_p_inoc_scaffold_1246_curated_5
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4856..5974)
DNA (1119bp) protein (373aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
ald; alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1]
alanine dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037C8EDC
scnpilot_p_inoc_scaffold_1246_curated_6
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6009..7325)
DNA (1317bp) protein (439aa)
beta alanine--pyruvate transaminase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Beta alanine--pyruvate transaminase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD25_9SPHN
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_7
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7707..8414
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS13_SPHAL
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_8
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8464..9813
DNA (1350bp) protein (450aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2]
L-glutamine synthetase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU35_SPHAL
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_9
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9815..11086
DNA (1272bp) protein (424aa)
FAD dependent oxidoreductase; K09471 gamma-glutamylputrescine oxidase [EC:1.4.3.-]
FAD dependent oxidoreductase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU36_SPHAL
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_10
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11083..12429
DNA (1347bp) protein (449aa)
aminotransferase n=1 Tax=Burkholderia oklahomensis RepID=UPI00016A8E03
aminotransferase class-III family protein
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_11
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12435..13823
DNA (1389bp) protein (463aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2]
L-glutamine synthetase n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU38_SPHAL
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13851..14750)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI000363DBEB
LysR family transcriptional regulator {ECO:0000313|EMBL:KGM31677.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
bacterial regulatory helix-turn-helix, lysR family protein
scnpilot_p_inoc_scaffold_1246_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14928..16040
DNA (1113bp) protein (371aa)
Putrescine-binding periplasmic protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD31_9SPHN
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
extracellular solute-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1246_curated_14
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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16076..16978
DNA (903bp) protein (301aa)
Transporter n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3U9_CAUCN
transporter; K11071 spermidine/putrescine transport system permease protein
Spermidine/putrescine ABC transporter, permease protein {ECO:0000313|EMBL:AAK25098.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
scnpilot_p_inoc_scaffold_1246_curated_15
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16975..17823
DNA (849bp) protein (283aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU41_SPHAL
binding-protein-dependent transport system inner membrane protein; K11070 spermidine/putrescine transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABF52831.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_p_inoc_scaffold_1246_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17828..18955
DNA (1128bp) protein (376aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
spermidine/putrescine ABC transporter ATP-binding subunit; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31]
Spermidine/putrescine ABC transporter ATPase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USU8_9SPHN
scnpilot_p_inoc_scaffold_1246_curated_17
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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19066..20496
DNA (1431bp) protein (477aa)
aminobutyraldehyde dehydrogenase (EC:1.2.1.19); K00137 aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
UPI0003CF55C7 related cluster n=1 Tax=unknown RepID=UPI0003CF55C7
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
scnpilot_p_inoc_scaffold_1246_curated_18
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20501..21232
DNA (732bp) protein (244aa)
Peptidase C26 n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GU44_SPHAL
peptidase C26; K07010 putative glutamine amidotransferase
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
scnpilot_p_inoc_scaffold_1246_curated_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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21349..22725
DNA (1377bp) protein (459aa)
putative aminotransferase; K12256 putrescine aminotransferase [EC:2.6.1.-]
Aminotransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WD35_9SPHN
Aminotransferase {ECO:0000313|EMBL:ENY81401.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
scnpilot_p_inoc_scaffold_1246_curated_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22692..23645)
DNA (954bp) protein (318aa)
Putative deoxyribodipyrimidine photolyase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z9_NOVAD
deoxyribodipyrimidine photolyase; K06955
Putative deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:ABD25674.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
scnpilot_p_inoc_scaffold_1246_curated_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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23824..24300
DNA (477bp) protein (159aa)
Transcriptional regulator, LuxR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Z7_NOVAD
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:KHS42633.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
Displaying 21 items

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